Cluster: MGYG000002634_CGC2
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000002634
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000002634_1 | MGYG000002634_1_106 | 99609 | 100379 | - | 3.D.10.1.4 |
| TC | MGYG000002634_1 | MGYG000002634_1_107 | 100372 | 102171 | - | 3.D.10.1.4 |
| pfam | MGYG000002634_1 | MGYG000002634_1_108 | 102450 | 103433 | + | tRNA-synt_2 |
| TC | MGYG000002634_1 | MGYG000002634_1_109 | 103744 | 104787 | + | 1.B.1.3.1 |
| pfam | MGYG000002634_1 | MGYG000002634_1_110 | 105026 | 105997 | - | Ferrochelatase |
| pfam | MGYG000002634_1 | MGYG000002634_1_111 | 105994 | 106413 | - | 4HBT |
| TC | MGYG000002634_1 | MGYG000002634_1_112 | 106810 | 112317 | + | 1.B.40.1.5 |
| CAZyme | MGYG000002634_1 | MGYG000002634_1_113 | 112473 | 113300 | + | GT8 |
| CAZyme | MGYG000002634_1 | MGYG000002634_1_114 | 113332 | 114306 | - | GT2 |
| CAZyme | MGYG000002634_1 | MGYG000002634_1_115 | 114341 | 115468 | - | GT2 |
| STP | MGYG000002634_1 | MGYG000002634_1_116 | 115686 | 117056 | + | Pyr_redox_2 |
| peptidase | MGYG000002634_1 | MGYG000002634_1_117 | 117125 | 117952 | - | C44.UPW |
| TC | MGYG000002634_1 | MGYG000002634_1_118 | 118173 | 119489 | - | 2.A.1.15.11 |
| TC | MGYG000002634_1 | MGYG000002634_1_119 | 119504 | 120211 | - | 2.A.88.8.6 |
| TC | MGYG000002634_1 | MGYG000002634_1_120 | 120461 | 122710 | + | 1.B.14.1.3 |
Gene ID: MGYG000002634_1_106
Type: TC
Location: 99609 - 100379 (-)
Type: TC
Location: 99609 - 100379 (-)
Gene ID: MGYG000002634_1_107
Type: TC
Location: 100372 - 102171 (-)
Type: TC
Location: 100372 - 102171 (-)
Gene ID: MGYG000002634_1_108
Type: pfam
Location: 102450 - 103433 (+)
Type: pfam
Location: 102450 - 103433 (+)
Gene ID: MGYG000002634_1_109
Type: TC
Location: 103744 - 104787 (+)
Type: TC
Location: 103744 - 104787 (+)
Gene ID: MGYG000002634_1_110
Type: pfam
Location: 105026 - 105997 (-)
Type: pfam
Location: 105026 - 105997 (-)
Gene ID: MGYG000002634_1_111
Type: pfam
Location: 105994 - 106413 (-)
Type: pfam
Location: 105994 - 106413 (-)
Gene ID: MGYG000002634_1_112
Type: TC
Location: 106810 - 112317 (+)
Type: TC
Location: 106810 - 112317 (+)
Gene ID: MGYG000002634_1_113
Type: CAZyme
Location: 112473 - 113300 (+)
Type: CAZyme
Location: 112473 - 113300 (+)
Gene ID: MGYG000002634_1_114
Type: CAZyme
Location: 113332 - 114306 (-)
Type: CAZyme
Location: 113332 - 114306 (-)
Gene ID: MGYG000002634_1_115
Type: CAZyme
Location: 114341 - 115468 (-)
Type: CAZyme
Location: 114341 - 115468 (-)
Gene ID: MGYG000002634_1_116
Type: STP
Location: 115686 - 117056 (+)
Type: STP
Location: 115686 - 117056 (+)
Gene ID: MGYG000002634_1_117
Type: peptidase
Location: 117125 - 117952 (-)
Type: peptidase
Location: 117125 - 117952 (-)
Gene ID: MGYG000002634_1_118
Type: TC
Location: 118173 - 119489 (-)
Type: TC
Location: 118173 - 119489 (-)
Gene ID: MGYG000002634_1_119
Type: TC
Location: 119504 - 120211 (-)
Type: TC
Location: 119504 - 120211 (-)
Gene ID: MGYG000002634_1_120
Type: TC
Location: 120461 - 122710 (+)
Type: TC
Location: 120461 - 122710 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_R
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000002634_1_107 | vegan > omnivore | 1.20024 | 0.00918 |
| MGYG000002634_1_107 | vegetarian > omnivore | 1.65048 | 0.01788 |
| MGYG000002634_1_117 | vegan > omnivore | 1.72022 | 0.00918 |
| MGYG000002634_1_117 | vegetarian > omnivore | 1.10314 | 0.01788 |