Cluster: MGYG000002579_CGC5
🧬 Cluster Details
- Gene Count: 25
- CAZyme Count: 6
- Substrate:
- Genome ID: MGYG000002579
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000002579_3 | MGYG000002579_3_39 | 39296 | 42271 | - | GH84 |
| pfam | MGYG000002579_3 | MGYG000002579_3_40 | 43133 | 43438 | + | EntA_Immun |
| TC | MGYG000002579_3 | MGYG000002579_3_41 | 44099 | 45622 | + | 2.A.49.5.5 |
| pfam | MGYG000002579_3 | MGYG000002579_3_42 | 45798 | 46682 | + | PRD | PRD | CAT_RBD |
| TC | MGYG000002579_3 | MGYG000002579_3_43 | 46683 | 47147 | + | 4.A.5.1.6 |
| TC | MGYG000002579_3 | MGYG000002579_3_44 | 47166 | 47444 | + | 4.A.5.1.6 |
| TC | MGYG000002579_3 | MGYG000002579_3_45 | 47467 | 48819 | + | 4.A.5.1.6 |
| NULL(UNKNOWN) | MGYG000002579_3 | MGYG000002579_3_46 | 48889 | 49131 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | MGYG000002579_3 | MGYG000002579_3_47 | 49133 | 49963 | + | Aldolase_II |
| CAZyme | MGYG000002579_3 | MGYG000002579_3_48 | 50048 | 53011 | - | GH2 |
| TF | MGYG000002579_3 | MGYG000002579_3_49 | 53149 | 53979 | + | HTH_AraC | HTH_AraC |
| TC | MGYG000002579_3 | MGYG000002579_3_50 | 54099 | 55070 | + | 4.A.6.1.13 |
| TC | MGYG000002579_3 | MGYG000002579_3_51 | 55073 | 55876 | + | 4.A.6.1.13 |
| TC | MGYG000002579_3 | MGYG000002579_3_52 | 55854 | 56660 | + | 4.A.6.1.13 |
| sulfatase | MGYG000002579_3 | MGYG000002579_3_53 | 56684 | 58156 | + | S1_26 |
| pfam | MGYG000002579_3 | MGYG000002579_3_54 | 58427 | 59284 | - | ROK |
| CAZyme | MGYG000002579_3 | MGYG000002579_3_55 | 59303 | 60679 | - | GH1 |
| TF | MGYG000002579_3 | MGYG000002579_3_56 | 60701 | 61414 | - | GntR |
| TC | MGYG000002579_3 | MGYG000002579_3_57 | 61580 | 62911 | + | 4.A.3.2.8 |
| CAZyme | MGYG000002579_3 | MGYG000002579_3_58 | 62932 | 65541 | + | GH38 |
| CAZyme | MGYG000002579_3 | MGYG000002579_3_59 | 65567 | 66832 | + | GH125 |
| pfam | MGYG000002579_3 | MGYG000002579_3_60 | 66943 | 67974 | + | Beta_elim_lyase |
| CAZyme | MGYG000002579_3 | MGYG000002579_3_61 | 68050 | 69060 | + | GH29 |
| TC | MGYG000002579_3 | MGYG000002579_3_62 | 69235 | 69714 | - | 4.A.1.1.11 |
| TC | MGYG000002579_3 | MGYG000002579_3_63 | 69744 | 71240 | - | 4.A.1.1.13 |
Gene ID: MGYG000002579_3_39
Type: CAZyme
Location: 39296 - 42271 (-)
Type: CAZyme
Location: 39296 - 42271 (-)
Gene ID: MGYG000002579_3_40
Type: pfam
Location: 43133 - 43438 (+)
Type: pfam
Location: 43133 - 43438 (+)
Gene ID: MGYG000002579_3_41
Type: TC
Location: 44099 - 45622 (+)
Type: TC
Location: 44099 - 45622 (+)
Gene ID: MGYG000002579_3_42
Type: pfam
Location: 45798 - 46682 (+)
Type: pfam
Location: 45798 - 46682 (+)
Gene ID: MGYG000002579_3_43
Type: TC
Location: 46683 - 47147 (+)
Type: TC
Location: 46683 - 47147 (+)
Gene ID: MGYG000002579_3_44
Type: TC
Location: 47166 - 47444 (+)
Type: TC
Location: 47166 - 47444 (+)
Gene ID: MGYG000002579_3_45
Type: TC
Location: 47467 - 48819 (+)
Type: TC
Location: 47467 - 48819 (+)
Gene ID: MGYG000002579_3_46
Type:
Location: 48889 - 49131 (+)
Type:
Location: 48889 - 49131 (+)
Gene ID: MGYG000002579_3_47
Type: pfam
Location: 49133 - 49963 (+)
Type: pfam
Location: 49133 - 49963 (+)
Gene ID: MGYG000002579_3_48
Type: CAZyme
Location: 50048 - 53011 (-)
Type: CAZyme
Location: 50048 - 53011 (-)
Gene ID: MGYG000002579_3_49
Type: TF
Location: 53149 - 53979 (+)
Type: TF
Location: 53149 - 53979 (+)
Gene ID: MGYG000002579_3_50
Type: TC
Location: 54099 - 55070 (+)
Type: TC
Location: 54099 - 55070 (+)
Gene ID: MGYG000002579_3_51
Type: TC
Location: 55073 - 55876 (+)
Type: TC
Location: 55073 - 55876 (+)
Gene ID: MGYG000002579_3_52
Type: TC
Location: 55854 - 56660 (+)
Type: TC
Location: 55854 - 56660 (+)
Gene ID: MGYG000002579_3_53
Type: sulfatase
Location: 56684 - 58156 (+)
Type: sulfatase
Location: 56684 - 58156 (+)
Gene ID: MGYG000002579_3_54
Type: pfam
Location: 58427 - 59284 (-)
Type: pfam
Location: 58427 - 59284 (-)
Gene ID: MGYG000002579_3_55
Type: CAZyme
Location: 59303 - 60679 (-)
Type: CAZyme
Location: 59303 - 60679 (-)
Gene ID: MGYG000002579_3_56
Type: TF
Location: 60701 - 61414 (-)
Type: TF
Location: 60701 - 61414 (-)
Gene ID: MGYG000002579_3_57
Type: TC
Location: 61580 - 62911 (+)
Type: TC
Location: 61580 - 62911 (+)
Gene ID: MGYG000002579_3_58
Type: CAZyme
Location: 62932 - 65541 (+)
Type: CAZyme
Location: 62932 - 65541 (+)
Gene ID: MGYG000002579_3_59
Type: CAZyme
Location: 65567 - 66832 (+)
Type: CAZyme
Location: 65567 - 66832 (+)
Gene ID: MGYG000002579_3_60
Type: pfam
Location: 66943 - 67974 (+)
Type: pfam
Location: 66943 - 67974 (+)
Gene ID: MGYG000002579_3_61
Type: CAZyme
Location: 68050 - 69060 (+)
Type: CAZyme
Location: 68050 - 69060 (+)
Gene ID: MGYG000002579_3_62
Type: TC
Location: 69235 - 69714 (-)
Type: TC
Location: 69235 - 69714 (-)
Gene ID: MGYG000002579_3_63
Type: TC
Location: 69744 - 71240 (-)
Type: TC
Location: 69744 - 71240 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Ligilactobacillus
Species
Ligilactobacillus sp900765635
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.