Cluster: MGYG000002566_CGC16
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000002566
- CGC Family ID: CGCFAM_00018
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000002566_115 | MGYG000002566_115_3 | 1090 | 2271 | - | GT4 |
| pfam | MGYG000002566_115 | MGYG000002566_115_4 | 2271 | 3452 | - | Epimerase_2 |
| pfam | MGYG000002566_115 | MGYG000002566_115_5 | 3457 | 4674 | - | Epimerase | Polysacc_synt_C |
| TC | MGYG000002566_115 | MGYG000002566_115_6 | 4676 | 5734 | - | 9.B.18.2.1 |
| CAZyme | MGYG000002566_115 | MGYG000002566_115_7 | 5735 | 6511 | - | GT26 |
Gene ID: MGYG000002566_115_3
Type: CAZyme
Location: 1090 - 2271 (-)
Type: CAZyme
Location: 1090 - 2271 (-)
Gene ID: MGYG000002566_115_4
Type: pfam
Location: 2271 - 3452 (-)
Type: pfam
Location: 2271 - 3452 (-)
Gene ID: MGYG000002566_115_5
Type: pfam
Location: 3457 - 4674 (-)
Type: pfam
Location: 3457 - 4674 (-)
Gene ID: MGYG000002566_115_6
Type: TC
Location: 4676 - 5734 (-)
Type: TC
Location: 4676 - 5734 (-)
Gene ID: MGYG000002566_115_7
Type: CAZyme
Location: 5735 - 6511 (-)
Type: CAZyme
Location: 5735 - 6511 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900550835
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000002566_115_4 | vegetarian > omnivore | 1.02004 | 0.03783 |
| MGYG000002566_115_5 | vegetarian > omnivore | 1.30792 | 0.03783 |
| MGYG000002566_115_5 | vegetarian > vegan | 1.79995 | 0.02628 |