Cluster: MGYG000002557_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000002557
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000002557_15 | MGYG000002557_15_21 | 21348 | 27761 | - | GH31_18 |
| TF | MGYG000002557_15 | MGYG000002557_15_22 | 28266 | 28706 | - | MarR |
| NULL(UNKNOWN) | MGYG000002557_15 | MGYG000002557_15_23 | 28811 | 29137 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000002557_15 | MGYG000002557_15_24 | 29333 | 30160 | - | 4.A.6.1.6 |
| TC | MGYG000002557_15 | MGYG000002557_15_25 | 30160 | 31017 | - | 4.A.6.1.1 |
| TC | MGYG000002557_15 | MGYG000002557_15_26 | 31089 | 31577 | - | 4.A.6.1.9 |
Gene ID: MGYG000002557_15_21
Type: CAZyme
Location: 21348 - 27761 (-)
Type: CAZyme
Location: 21348 - 27761 (-)
Gene ID: MGYG000002557_15_22
Type: TF
Location: 28266 - 28706 (-)
Type: TF
Location: 28266 - 28706 (-)
Gene ID: MGYG000002557_15_23
Type:
Location: 28811 - 29137 (-)
Type:
Location: 28811 - 29137 (-)
Gene ID: MGYG000002557_15_24
Type: TC
Location: 29333 - 30160 (-)
Type: TC
Location: 29333 - 30160 (-)
Gene ID: MGYG000002557_15_25
Type: TC
Location: 30160 - 31017 (-)
Type: TC
Location: 30160 - 31017 (-)
Gene ID: MGYG000002557_15_26
Type: TC
Location: 31089 - 31577 (-)
Type: TC
Location: 31089 - 31577 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902388345
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000002557_15_21 | vegetarian > omnivore | 1.37461 | 0.03761 |
| MGYG000002557_15_21 | vegetarian > vegan | 2.31715 | 0.00701 |