Cluster: MGYG000002187_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000002187
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000002187_10 | MGYG000002187_10_30 | 27490 | 28242 | - | 3.A.1.3.20 |
| TC | MGYG000002187_10 | MGYG000002187_10_31 | 28255 | 29616 | - | 3.A.1.3.16 |
| TC | MGYG000002187_10 | MGYG000002187_10_32 | 29734 | 30594 | - | 3.A.1.3.15 |
| pfam | MGYG000002187_10 | MGYG000002187_10_33 | 30742 | 31608 | - | AP_endonuc_2 |
| CAZyme | MGYG000002187_10 | MGYG000002187_10_34 | 31775 | 32794 | - | GH109 |
Gene ID: MGYG000002187_10_30
Type: TC
Location: 27490 - 28242 (-)
Type: TC
Location: 27490 - 28242 (-)
Gene ID: MGYG000002187_10_31
Type: TC
Location: 28255 - 29616 (-)
Type: TC
Location: 28255 - 29616 (-)
Gene ID: MGYG000002187_10_32
Type: TC
Location: 29734 - 30594 (-)
Type: TC
Location: 29734 - 30594 (-)
Gene ID: MGYG000002187_10_33
Type: pfam
Location: 30742 - 31608 (-)
Type: pfam
Location: 30742 - 31608 (-)
Gene ID: MGYG000002187_10_34
Type: CAZyme
Location: 31775 - 32794 (-)
Type: CAZyme
Location: 31775 - 32794 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp000434535
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.