Cluster: MGYG000002142_CGC1
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000002142
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000002142_1 | MGYG000002142_1_29 | 36517 | 36855 | - | 4.A.3.1.2 |
| TF | MGYG000002142_1 | MGYG000002142_1_30 | 37070 | 38074 | - | LacI |
| TC | MGYG000002142_1 | MGYG000002142_1_31 | 38432 | 40207 | + | 4.A.3.1.1 |
| CAZyme | MGYG000002142_1 | MGYG000002142_1_32 | 40274 | 41713 | + | GH1 |
| TF | MGYG000002142_1 | MGYG000002142_1_33 | 41990 | 43027 | - | LacI |
| CAZyme | MGYG000002142_1 | MGYG000002142_1_34 | 43369 | 44811 | + | GH1 |
| TC | MGYG000002142_1 | MGYG000002142_1_35 | 44984 | 46744 | + | 4.A.3.1.1 |
| TF | MGYG000002142_1 | MGYG000002142_1_36 | 46998 | 48056 | - | LacI |
| TC | MGYG000002142_1 | MGYG000002142_1_37 | 48285 | 50063 | + | 4.A.3.1.1 |
| CAZyme | MGYG000002142_1 | MGYG000002142_1_38 | 50139 | 51560 | + | GH1 |
| TF | MGYG000002142_1 | MGYG000002142_1_39 | 51757 | 52521 | - | HTH_DeoR |
| sulfatase | MGYG000002142_1 | MGYG000002142_1_40 | 52728 | 53780 | + | S1_4 |
| TC | MGYG000002142_1 | MGYG000002142_1_41 | 54107 | 54589 | - | 4.A.6.1.5 |
Gene ID: MGYG000002142_1_29
Type: TC
Location: 36517 - 36855 (-)
Type: TC
Location: 36517 - 36855 (-)
Gene ID: MGYG000002142_1_30
Type: TF
Location: 37070 - 38074 (-)
Type: TF
Location: 37070 - 38074 (-)
Gene ID: MGYG000002142_1_31
Type: TC
Location: 38432 - 40207 (+)
Type: TC
Location: 38432 - 40207 (+)
Gene ID: MGYG000002142_1_32
Type: CAZyme
Location: 40274 - 41713 (+)
Type: CAZyme
Location: 40274 - 41713 (+)
Gene ID: MGYG000002142_1_33
Type: TF
Location: 41990 - 43027 (-)
Type: TF
Location: 41990 - 43027 (-)
Gene ID: MGYG000002142_1_34
Type: CAZyme
Location: 43369 - 44811 (+)
Type: CAZyme
Location: 43369 - 44811 (+)
Gene ID: MGYG000002142_1_35
Type: TC
Location: 44984 - 46744 (+)
Type: TC
Location: 44984 - 46744 (+)
Gene ID: MGYG000002142_1_36
Type: TF
Location: 46998 - 48056 (-)
Type: TF
Location: 46998 - 48056 (-)
Gene ID: MGYG000002142_1_37
Type: TC
Location: 48285 - 50063 (+)
Type: TC
Location: 48285 - 50063 (+)
Gene ID: MGYG000002142_1_38
Type: CAZyme
Location: 50139 - 51560 (+)
Type: CAZyme
Location: 50139 - 51560 (+)
Gene ID: MGYG000002142_1_39
Type: TF
Location: 51757 - 52521 (-)
Type: TF
Location: 51757 - 52521 (-)
Gene ID: MGYG000002142_1_40
Type: sulfatase
Location: 52728 - 53780 (+)
Type: sulfatase
Location: 52728 - 53780 (+)
Gene ID: MGYG000002142_1_41
Type: TC
Location: 54107 - 54589 (-)
Type: TC
Location: 54107 - 54589 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900545445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000002142_1_33 | vegetarian > omnivore | 1.06212 | 0.02677 |