Cluster: MGYG000002140_CGC6
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 7
- Substrate:
- Genome ID: MGYG000002140
- CGC Family ID: CGCFAM_00168
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000002140_1 | MGYG000002140_1_184 | 200000 | 203245 | + | GH25 |
| pfam | MGYG000002140_1 | MGYG000002140_1_185 | 203299 | 204375 | + | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd |
| pfam | MGYG000002140_1 | MGYG000002140_1_186 | 204536 | 205405 | + | NTP_transferase | NTP_transf_3 |
| CAZyme | MGYG000002140_1 | MGYG000002140_1_187 | 205395 | 206654 | + | GH25 |
| pfam | MGYG000002140_1 | MGYG000002140_1_188 | 206725 | 207291 | + | dTDP_sugar_isom |
| TC | MGYG000002140_1 | MGYG000002140_1_189 | 207294 | 208286 | + | 3.A.1.104.1 |
| TC | MGYG000002140_1 | MGYG000002140_1_190 | 208321 | 209619 | + | 3.A.1.103.6 |
| pfam | MGYG000002140_1 | MGYG000002140_1_191 | 209644 | 211701 | + | Methyltransf_11 | Methyltransf_12 | Methyltransf_25 | Methyltransf_31 |
| CAZyme | MGYG000002140_1 | MGYG000002140_1_192 | 211716 | 213602 | + | GT2 |
| CAZyme | MGYG000002140_1 | MGYG000002140_1_193 | 213607 | 215634 | + | GT2 | GT2 |
| pfam | MGYG000002140_1 | MGYG000002140_1_194 | 215738 | 217459 | + | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III |
| CAZyme | MGYG000002140_1 | MGYG000002140_1_195 | 217464 | 218945 | + | GT2 |
| CAZyme | MGYG000002140_1 | MGYG000002140_1_196 | 218956 | 219918 | + | GT2 |
| TC | MGYG000002140_1 | MGYG000002140_1_197 | 220035 | 221441 | + | 9.B.18.1.1 |
| pfam | MGYG000002140_1 | MGYG000002140_1_198 | 221479 | 222603 | + | LytR_cpsA_psr |
| CAZyme | MGYG000002140_1 | MGYG000002140_1_199 | 222704 | 223654 | + | GT2 |
Gene ID: MGYG000002140_1_184
Type: CAZyme
Location: 200000 - 203245 (+)
Type: CAZyme
Location: 200000 - 203245 (+)
Gene ID: MGYG000002140_1_185
Type: pfam
Location: 203299 - 204375 (+)
Type: pfam
Location: 203299 - 204375 (+)
Gene ID: MGYG000002140_1_186
Type: pfam
Location: 204536 - 205405 (+)
Type: pfam
Location: 204536 - 205405 (+)
Gene ID: MGYG000002140_1_187
Type: CAZyme
Location: 205395 - 206654 (+)
Type: CAZyme
Location: 205395 - 206654 (+)
Gene ID: MGYG000002140_1_188
Type: pfam
Location: 206725 - 207291 (+)
Type: pfam
Location: 206725 - 207291 (+)
Gene ID: MGYG000002140_1_189
Type: TC
Location: 207294 - 208286 (+)
Type: TC
Location: 207294 - 208286 (+)
Gene ID: MGYG000002140_1_190
Type: TC
Location: 208321 - 209619 (+)
Type: TC
Location: 208321 - 209619 (+)
Gene ID: MGYG000002140_1_191
Type: pfam
Location: 209644 - 211701 (+)
Type: pfam
Location: 209644 - 211701 (+)
Gene ID: MGYG000002140_1_192
Type: CAZyme
Location: 211716 - 213602 (+)
Type: CAZyme
Location: 211716 - 213602 (+)
Gene ID: MGYG000002140_1_193
Type: CAZyme
Location: 213607 - 215634 (+)
Type: CAZyme
Location: 213607 - 215634 (+)
Gene ID: MGYG000002140_1_194
Type: pfam
Location: 215738 - 217459 (+)
Type: pfam
Location: 215738 - 217459 (+)
Gene ID: MGYG000002140_1_195
Type: CAZyme
Location: 217464 - 218945 (+)
Type: CAZyme
Location: 217464 - 218945 (+)
Gene ID: MGYG000002140_1_196
Type: CAZyme
Location: 218956 - 219918 (+)
Type: CAZyme
Location: 218956 - 219918 (+)
Gene ID: MGYG000002140_1_197
Type: TC
Location: 220035 - 221441 (+)
Type: TC
Location: 220035 - 221441 (+)
Gene ID: MGYG000002140_1_198
Type: pfam
Location: 221479 - 222603 (+)
Type: pfam
Location: 221479 - 222603 (+)
Gene ID: MGYG000002140_1_199
Type: CAZyme
Location: 222704 - 223654 (+)
Type: CAZyme
Location: 222704 - 223654 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
CAG-510
Species
CAG-510 sp900551115
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000002140_1_186 | vegetarian > vegan | 1.07316 | 0.00364 |