Cluster: MGYG000002117_CGC6
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000002117
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000002117_8 | MGYG000002117_8_38 | 45726 | 46943 | - | GT4 |
| pfam | MGYG000002117_8 | MGYG000002117_8_39 | 46958 | 47722 | - | BcrAD_BadFG |
| pfam | MGYG000002117_8 | MGYG000002117_8_40 | 47878 | 49041 | - | HGD-D |
| TC | MGYG000002117_8 | MGYG000002117_8_41 | 49118 | 49903 | - | 3.A.1.5.36 |
| TC | MGYG000002117_8 | MGYG000002117_8_42 | 49893 | 50888 | - | 3.A.1.5.37 |
| TC | MGYG000002117_8 | MGYG000002117_8_43 | 50892 | 51722 | - | 3.A.1.5.39 |
| TC | MGYG000002117_8 | MGYG000002117_8_44 | 51719 | 52672 | - | 3.A.1.5.39 |
| TC | MGYG000002117_8 | MGYG000002117_8_45 | 52761 | 54371 | - | 3.A.1.5.11 |
| pfam | MGYG000002117_8 | MGYG000002117_8_46 | 54556 | 55839 | - | HGD-D |
| TC | MGYG000002117_8 | MGYG000002117_8_47 | 56268 | 57338 | - | 3.A.1.1.3 |
| TC | MGYG000002117_8 | MGYG000002117_8_48 | 57342 | 58784 | - | 3.A.1.8.1 |
Gene ID: MGYG000002117_8_38
Type: CAZyme
Location: 45726 - 46943 (-)
Type: CAZyme
Location: 45726 - 46943 (-)
Gene ID: MGYG000002117_8_39
Type: pfam
Location: 46958 - 47722 (-)
Type: pfam
Location: 46958 - 47722 (-)
Gene ID: MGYG000002117_8_40
Type: pfam
Location: 47878 - 49041 (-)
Type: pfam
Location: 47878 - 49041 (-)
Gene ID: MGYG000002117_8_41
Type: TC
Location: 49118 - 49903 (-)
Type: TC
Location: 49118 - 49903 (-)
Gene ID: MGYG000002117_8_42
Type: TC
Location: 49893 - 50888 (-)
Type: TC
Location: 49893 - 50888 (-)
Gene ID: MGYG000002117_8_43
Type: TC
Location: 50892 - 51722 (-)
Type: TC
Location: 50892 - 51722 (-)
Gene ID: MGYG000002117_8_44
Type: TC
Location: 51719 - 52672 (-)
Type: TC
Location: 51719 - 52672 (-)
Gene ID: MGYG000002117_8_45
Type: TC
Location: 52761 - 54371 (-)
Type: TC
Location: 52761 - 54371 (-)
Gene ID: MGYG000002117_8_46
Type: pfam
Location: 54556 - 55839 (-)
Type: pfam
Location: 54556 - 55839 (-)
Gene ID: MGYG000002117_8_47
Type: TC
Location: 56268 - 57338 (-)
Type: TC
Location: 56268 - 57338 (-)
Gene ID: MGYG000002117_8_48
Type: TC
Location: 57342 - 58784 (-)
Type: TC
Location: 57342 - 58784 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900556365
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000002117_8_38 | vegan > omnivore | 1.62242 | 0.01144 |
| MGYG000002117_8_41 | vegan > omnivore | 2.82923 | 0.01144 |
| MGYG000002117_8_41 | vegetarian > omnivore | 1.04905 | 0.03043 |
| MGYG000002117_8_43 | vegan > omnivore | 2.95936 | 0.01144 |
| MGYG000002117_8_43 | vegetarian > omnivore | 1.30353 | 0.03043 |
| MGYG000002117_8_44 | vegan > omnivore | 2.82907 | 0.01144 |
| MGYG000002117_8_44 | vegetarian > omnivore | 1.28430 | 0.03043 |
| MGYG000002117_8_45 | vegan > omnivore | 3.26293 | 0.01144 |
| MGYG000002117_8_45 | vegetarian > omnivore | 1.10151 | 0.03043 |