Cluster: MGYG000002111_CGC18
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 5
- Substrate:
- Genome ID: MGYG000002111
- CGC Family ID: CGCFAM_00006
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000002111_19 | MGYG000002111_19_21 | 25280 | 25999 | + | 9.B.18.1.2 |
| CAZyme | MGYG000002111_19 | MGYG000002111_19_22 | 26000 | 27118 | + | GT4 |
| pfam | MGYG000002111_19 | MGYG000002111_19_23 | 27120 | 27713 | + | Hexapep | Hexapep_2 |
| CAZyme | MGYG000002111_19 | MGYG000002111_19_24 | 27720 | 28934 | + | GT4 |
| CAZyme | MGYG000002111_19 | MGYG000002111_19_25 | 28924 | 29766 | + | GT2 |
| pfam | MGYG000002111_19 | MGYG000002111_19_26 | 29786 | 30931 | + | Radical_SAM | SPASM |
| pfam | MGYG000002111_19 | MGYG000002111_19_27 | 31504 | 32595 | + | Glyco_trans_1_4 |
| CAZyme | MGYG000002111_19 | MGYG000002111_19_28 | 32552 | 33364 | + | GT32 |
| NULL(UNKNOWN) | MGYG000002111_19 | MGYG000002111_19_29 | 33403 | 34674 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000002111_19 | MGYG000002111_19_30 | 34664 | 35644 | + | GT2 |
| TC | MGYG000002111_19 | MGYG000002111_19_31 | 35647 | 37098 | + | 2.A.66.2.16 |
Gene ID: MGYG000002111_19_21
Type: TC
Location: 25280 - 25999 (+)
Type: TC
Location: 25280 - 25999 (+)
Gene ID: MGYG000002111_19_22
Type: CAZyme
Location: 26000 - 27118 (+)
Type: CAZyme
Location: 26000 - 27118 (+)
Gene ID: MGYG000002111_19_23
Type: pfam
Location: 27120 - 27713 (+)
Type: pfam
Location: 27120 - 27713 (+)
Gene ID: MGYG000002111_19_24
Type: CAZyme
Location: 27720 - 28934 (+)
Type: CAZyme
Location: 27720 - 28934 (+)
Gene ID: MGYG000002111_19_25
Type: CAZyme
Location: 28924 - 29766 (+)
Type: CAZyme
Location: 28924 - 29766 (+)
Gene ID: MGYG000002111_19_26
Type: pfam
Location: 29786 - 30931 (+)
Type: pfam
Location: 29786 - 30931 (+)
Gene ID: MGYG000002111_19_27
Type: pfam
Location: 31504 - 32595 (+)
Type: pfam
Location: 31504 - 32595 (+)
Gene ID: MGYG000002111_19_28
Type: CAZyme
Location: 32552 - 33364 (+)
Type: CAZyme
Location: 32552 - 33364 (+)
Gene ID: MGYG000002111_19_29
Type:
Location: 33403 - 34674 (+)
Type:
Location: 33403 - 34674 (+)
Gene ID: MGYG000002111_19_30
Type: CAZyme
Location: 34664 - 35644 (+)
Type: CAZyme
Location: 34664 - 35644 (+)
Gene ID: MGYG000002111_19_31
Type: TC
Location: 35647 - 37098 (+)
Type: TC
Location: 35647 - 37098 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900541015
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000002111_19_22 | vegetarian > vegan | 2.87995 | 0.02517 |
| MGYG000002111_19_26 | vegetarian > vegan | 1.38826 | 0.02517 |