Cluster: MGYG000002111_CGC13
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000002111
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000002111_7 | MGYG000002111_7_62 | 64501 | 65922 | - | GH1 |
| TC | MGYG000002111_7 | MGYG000002111_7_63 | 65999 | 67777 | - | 4.A.3.1.1 |
| TF | MGYG000002111_7 | MGYG000002111_7_64 | 68052 | 69062 | + | LacI |
| TC | MGYG000002111_7 | MGYG000002111_7_65 | 69395 | 71155 | - | 4.A.3.1.1 |
| CAZyme | MGYG000002111_7 | MGYG000002111_7_66 | 71332 | 72774 | - | GH1 |
| TF | MGYG000002111_7 | MGYG000002111_7_67 | 73116 | 74153 | + | LacI |
| CAZyme | MGYG000002111_7 | MGYG000002111_7_68 | 74417 | 75856 | - | GH1 |
| TC | MGYG000002111_7 | MGYG000002111_7_69 | 75923 | 77689 | - | 4.A.3.1.1 |
| TF | MGYG000002111_7 | MGYG000002111_7_70 | 78046 | 79050 | + | LacI |
| TC | MGYG000002111_7 | MGYG000002111_7_71 | 79265 | 79603 | + | 4.A.3.1.2 |
Gene ID: MGYG000002111_7_62
Type: CAZyme
Location: 64501 - 65922 (-)
Type: CAZyme
Location: 64501 - 65922 (-)
Gene ID: MGYG000002111_7_63
Type: TC
Location: 65999 - 67777 (-)
Type: TC
Location: 65999 - 67777 (-)
Gene ID: MGYG000002111_7_64
Type: TF
Location: 68052 - 69062 (+)
Type: TF
Location: 68052 - 69062 (+)
Gene ID: MGYG000002111_7_65
Type: TC
Location: 69395 - 71155 (-)
Type: TC
Location: 69395 - 71155 (-)
Gene ID: MGYG000002111_7_66
Type: CAZyme
Location: 71332 - 72774 (-)
Type: CAZyme
Location: 71332 - 72774 (-)
Gene ID: MGYG000002111_7_67
Type: TF
Location: 73116 - 74153 (+)
Type: TF
Location: 73116 - 74153 (+)
Gene ID: MGYG000002111_7_68
Type: CAZyme
Location: 74417 - 75856 (-)
Type: CAZyme
Location: 74417 - 75856 (-)
Gene ID: MGYG000002111_7_69
Type: TC
Location: 75923 - 77689 (-)
Type: TC
Location: 75923 - 77689 (-)
Gene ID: MGYG000002111_7_70
Type: TF
Location: 78046 - 79050 (+)
Type: TF
Location: 78046 - 79050 (+)
Gene ID: MGYG000002111_7_71
Type: TC
Location: 79265 - 79603 (+)
Type: TC
Location: 79265 - 79603 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900541015
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000002111_7_67 | vegetarian > omnivore | 1.00145 | 0.02517 |