Cluster: MGYG000002111_CGC12
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000002111
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000002111_7 | MGYG000002111_7_27 | 27871 | 29358 | + | 4.A.1.1.7 |
| TF | MGYG000002111_7 | MGYG000002111_7_28 | 29591 | 30322 | + | GntR |
| CAZyme | MGYG000002111_7 | MGYG000002111_7_29 | 30466 | 31635 | + | CE9 |
| pfam | MGYG000002111_7 | MGYG000002111_7_30 | 31668 | 32141 | + | DUF386 |
| CAZyme | MGYG000002111_7 | MGYG000002111_7_31 | 32627 | 34423 | + | GH35 |
| TC | MGYG000002111_7 | MGYG000002111_7_32 | 34426 | 34890 | + | 4.A.6.1.18 |
| TC | MGYG000002111_7 | MGYG000002111_7_33 | 34984 | 35871 | + | 4.A.6.1.18 |
| TC | MGYG000002111_7 | MGYG000002111_7_34 | 35861 | 36700 | + | 4.A.6.1.18 |
| NULL(UNKNOWN) | MGYG000002111_7 | MGYG000002111_7_35 | 36889 | 37512 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000002111_7 | MGYG000002111_7_36 | 37594 | 38022 | + | 4.A.6.1.8 |
| TF | MGYG000002111_7 | MGYG000002111_7_37 | 38110 | 38844 | + | GntR |
| STP | MGYG000002111_7 | MGYG000002111_7_38 | 38956 | 40122 | + | SIS | SIS |
| CAZyme | MGYG000002111_7 | MGYG000002111_7_39 | 40241 | 41410 | + | CE9 |
Gene ID: MGYG000002111_7_27
Type: TC
Location: 27871 - 29358 (+)
Type: TC
Location: 27871 - 29358 (+)
Gene ID: MGYG000002111_7_28
Type: TF
Location: 29591 - 30322 (+)
Type: TF
Location: 29591 - 30322 (+)
Gene ID: MGYG000002111_7_29
Type: CAZyme
Location: 30466 - 31635 (+)
Type: CAZyme
Location: 30466 - 31635 (+)
Gene ID: MGYG000002111_7_30
Type: pfam
Location: 31668 - 32141 (+)
Type: pfam
Location: 31668 - 32141 (+)
Gene ID: MGYG000002111_7_31
Type: CAZyme
Location: 32627 - 34423 (+)
Type: CAZyme
Location: 32627 - 34423 (+)
Gene ID: MGYG000002111_7_32
Type: TC
Location: 34426 - 34890 (+)
Type: TC
Location: 34426 - 34890 (+)
Gene ID: MGYG000002111_7_33
Type: TC
Location: 34984 - 35871 (+)
Type: TC
Location: 34984 - 35871 (+)
Gene ID: MGYG000002111_7_34
Type: TC
Location: 35861 - 36700 (+)
Type: TC
Location: 35861 - 36700 (+)
Gene ID: MGYG000002111_7_35
Type:
Location: 36889 - 37512 (+)
Type:
Location: 36889 - 37512 (+)
Gene ID: MGYG000002111_7_36
Type: TC
Location: 37594 - 38022 (+)
Type: TC
Location: 37594 - 38022 (+)
Gene ID: MGYG000002111_7_37
Type: TF
Location: 38110 - 38844 (+)
Type: TF
Location: 38110 - 38844 (+)
Gene ID: MGYG000002111_7_38
Type: STP
Location: 38956 - 40122 (+)
Type: STP
Location: 38956 - 40122 (+)
Gene ID: MGYG000002111_7_39
Type: CAZyme
Location: 40241 - 41410 (+)
Type: CAZyme
Location: 40241 - 41410 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900541015
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000002111_7_28 | vegetarian > vegan | 3.32162 | 0.02517 |
| MGYG000002111_7_31 | vegetarian > vegan | 2.66884 | 0.02517 |
| MGYG000002111_7_32 | vegetarian > vegan | 3.17406 | 0.02517 |
| MGYG000002111_7_34 | vegetarian > vegan | 2.40520 | 0.02517 |