Cluster: MGYG000002111_CGC11
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 4
- Substrate:
- Genome ID: MGYG000002111
- CGC Family ID: CGCFAM_00018
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000002111_6 | MGYG000002111_6_65 | 74160 | 77270 | + | GH73 |
| NULL(UNKNOWN) | MGYG000002111_6 | MGYG000002111_6_66 | 78011 | 78508 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000002111_6 | MGYG000002111_6_67 | 78759 | 79814 | + | 9.B.18.2.1 |
| pfam | MGYG000002111_6 | MGYG000002111_6_68 | 79816 | 81033 | + | Epimerase | Polysacc_synt_C |
| CAZyme | MGYG000002111_6 | MGYG000002111_6_69 | 81093 | 82157 | + | GT4 |
| pfam | MGYG000002111_6 | MGYG000002111_6_70 | 82179 | 83354 | + | Epimerase_2 |
| CAZyme | MGYG000002111_6 | MGYG000002111_6_71 | 83354 | 84595 | + | GT4 |
| CAZyme | MGYG000002111_6 | MGYG000002111_6_72 | 84601 | 85335 | + | GT2 |
Gene ID: MGYG000002111_6_65
Type: CAZyme
Location: 74160 - 77270 (+)
Type: CAZyme
Location: 74160 - 77270 (+)
Gene ID: MGYG000002111_6_66
Type:
Location: 78011 - 78508 (+)
Type:
Location: 78011 - 78508 (+)
Gene ID: MGYG000002111_6_67
Type: TC
Location: 78759 - 79814 (+)
Type: TC
Location: 78759 - 79814 (+)
Gene ID: MGYG000002111_6_68
Type: pfam
Location: 79816 - 81033 (+)
Type: pfam
Location: 79816 - 81033 (+)
Gene ID: MGYG000002111_6_69
Type: CAZyme
Location: 81093 - 82157 (+)
Type: CAZyme
Location: 81093 - 82157 (+)
Gene ID: MGYG000002111_6_70
Type: pfam
Location: 82179 - 83354 (+)
Type: pfam
Location: 82179 - 83354 (+)
Gene ID: MGYG000002111_6_71
Type: CAZyme
Location: 83354 - 84595 (+)
Type: CAZyme
Location: 83354 - 84595 (+)
Gene ID: MGYG000002111_6_72
Type: CAZyme
Location: 84601 - 85335 (+)
Type: CAZyme
Location: 84601 - 85335 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900541015
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000002111_6_65 | vegan > omnivore | 1.62588 | 0.01141 |
| MGYG000002111_6_65 | vegetarian > omnivore | 2.20486 | 0.02517 |
| MGYG000002111_6_66 | vegan > omnivore | 1.55270 | 0.01141 |
| MGYG000002111_6_66 | vegetarian > omnivore | 2.31273 | 0.03186 |
| MGYG000002111_6_68 | vegetarian > omnivore | 1.41861 | 0.02517 |
| MGYG000002111_6_68 | vegetarian > vegan | 1.58043 | 0.02517 |
| MGYG000002111_6_71 | vegetarian > omnivore | 1.42248 | 0.03186 |
| MGYG000002111_6_72 | vegan > omnivore | 1.45925 | 0.01141 |
| MGYG000002111_6_72 | vegetarian > omnivore | 2.35954 | 0.03186 |