Cluster: MGYG000002083_CGC3
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000002083
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000002083_2 | MGYG000002083_2_111 | 134002 | 134769 | - | 1.A.23.4.2 |
| TC | MGYG000002083_2 | MGYG000002083_2_112 | 134917 | 135711 | - | 3.A.1.34.1 |
| TC | MGYG000002083_2 | MGYG000002083_2_113 | 135704 | 136627 | - | 3.A.1.34.1 |
| TC | MGYG000002083_2 | MGYG000002083_2_114 | 136832 | 137812 | - | 3.A.1.34.1 |
| NULL(UNKNOWN) | MGYG000002083_2 | MGYG000002083_2_115 | 137973 | 138758 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | MGYG000002083_2 | MGYG000002083_2_116 | 139008 | 140411 | - | tRNA-synt_2 | tRNA_anti-codon |
| TC | MGYG000002083_2 | MGYG000002083_2_117 | 140593 | 141234 | - | 4.A.1.2.6 |
| peptidase | MGYG000002083_2 | MGYG000002083_2_118 | 141403 | 142302 | + | S09.UPW |
| NULL(UNKNOWN) | MGYG000002083_2 | MGYG000002083_2_119 | 142350 | 142670 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000002083_2 | MGYG000002083_2_120 | 142792 | 145152 | + | 9.A.8.1.6 |
| TC | MGYG000002083_2 | MGYG000002083_2_121 | 145277 | 146473 | + | 2.A.1.2.18 |
| CAZyme | MGYG000002083_2 | MGYG000002083_2_122 | 146627 | 148003 | + | GH13_20 |
Gene ID: MGYG000002083_2_111
Type: TC
Location: 134002 - 134769 (-)
Type: TC
Location: 134002 - 134769 (-)
Gene ID: MGYG000002083_2_112
Type: TC
Location: 134917 - 135711 (-)
Type: TC
Location: 134917 - 135711 (-)
Gene ID: MGYG000002083_2_113
Type: TC
Location: 135704 - 136627 (-)
Type: TC
Location: 135704 - 136627 (-)
Gene ID: MGYG000002083_2_114
Type: TC
Location: 136832 - 137812 (-)
Type: TC
Location: 136832 - 137812 (-)
Gene ID: MGYG000002083_2_115
Type:
Location: 137973 - 138758 (-)
Type:
Location: 137973 - 138758 (-)
Gene ID: MGYG000002083_2_116
Type: pfam
Location: 139008 - 140411 (-)
Type: pfam
Location: 139008 - 140411 (-)
Gene ID: MGYG000002083_2_117
Type: TC
Location: 140593 - 141234 (-)
Type: TC
Location: 140593 - 141234 (-)
Gene ID: MGYG000002083_2_118
Type: peptidase
Location: 141403 - 142302 (+)
Type: peptidase
Location: 141403 - 142302 (+)
Gene ID: MGYG000002083_2_119
Type:
Location: 142350 - 142670 (+)
Type:
Location: 142350 - 142670 (+)
Gene ID: MGYG000002083_2_120
Type: TC
Location: 142792 - 145152 (+)
Type: TC
Location: 142792 - 145152 (+)
Gene ID: MGYG000002083_2_121
Type: TC
Location: 145277 - 146473 (+)
Type: TC
Location: 145277 - 146473 (+)
Gene ID: MGYG000002083_2_122
Type: CAZyme
Location: 146627 - 148003 (+)
Type: CAZyme
Location: 146627 - 148003 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902475525
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.