Cluster: MGYG000001992_CGC13
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000001992
- CGC Family ID: CGCFAM_00154
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000001992_84 | MGYG000001992_84_1 | 91 | 627 | - | 4.A.1.2.6 |
| CAZyme | MGYG000001992_84 | MGYG000001992_84_2 | 768 | 2207 | - | GH1 |
| TF | MGYG000001992_84 | MGYG000001992_84_3 | 2463 | 3464 | - | HTH_AraC |
| CAZyme | MGYG000001992_84 | MGYG000001992_84_4 | 3589 | 6204 | + | GH106 |
| TF | MGYG000001992_84 | MGYG000001992_84_5 | 6305 | 7159 | + | HTH_6 |
| CAZyme | MGYG000001992_84 | MGYG000001992_84_6 | 7310 | 8623 | - | GH140 |
Gene ID: MGYG000001992_84_1
Type: TC
Location: 91 - 627 (-)
Type: TC
Location: 91 - 627 (-)
Gene ID: MGYG000001992_84_2
Type: CAZyme
Location: 768 - 2207 (-)
Type: CAZyme
Location: 768 - 2207 (-)
Gene ID: MGYG000001992_84_3
Type: TF
Location: 2463 - 3464 (-)
Type: TF
Location: 2463 - 3464 (-)
Gene ID: MGYG000001992_84_4
Type: CAZyme
Location: 3589 - 6204 (+)
Type: CAZyme
Location: 3589 - 6204 (+)
Gene ID: MGYG000001992_84_5
Type: TF
Location: 6305 - 7159 (+)
Type: TF
Location: 6305 - 7159 (+)
Gene ID: MGYG000001992_84_6
Type: CAZyme
Location: 7310 - 8623 (-)
Type: CAZyme
Location: 7310 - 8623 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902474645
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.