Cluster: MGYG000001925_CGC9
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 5
- Substrate:
- Genome ID: MGYG000001925
- CGC Family ID: CGCFAM_05994
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000001925_4 | MGYG000001925_4_97 | 104684 | 105598 | + | 2.A.4.1.3 |
| CAZyme | MGYG000001925_4 | MGYG000001925_4_98 | 105672 | 107039 | - | GH57 |
| CAZyme | MGYG000001925_4 | MGYG000001925_4_99 | 107058 | 108329 | - | GT4 |
| CAZyme | MGYG000001925_4 | MGYG000001925_4_100 | 108345 | 110288 | - | GH133 |
| CAZyme | MGYG000001925_4 | MGYG000001925_4_101 | 110553 | 112907 | - | GH35 |
| CAZyme | MGYG000001925_4 | MGYG000001925_4_102 | 113120 | 115048 | + | GH43_19 | GH43_34 |
| NULL(UNKNOWN) | MGYG000001925_4 | MGYG000001925_4_103 | 115180 | 115635 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | MGYG000001925_4 | MGYG000001925_4_104 | 115632 | 116087 | - | DUF3990 |
| TC | MGYG000001925_4 | MGYG000001925_4_105 | 116100 | 117677 | - | 1.B.9.4.2 |
| NULL(UNKNOWN) | MGYG000001925_4 | MGYG000001925_4_106 | 117706 | 118899 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | MGYG000001925_4 | MGYG000001925_4_107 | 119040 | 119174 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000001925_4 | MGYG000001925_4_108 | 119417 | 122410 | + | 1.B.14.6.1 |
| pfam | MGYG000001925_4 | MGYG000001925_4_109 | 122433 | 124052 | + | SusD_RagB | SusD-like_3 |
| TC | MGYG000001925_4 | MGYG000001925_4_110 | 124613 | 126661 | + | 1.B.14.6.1 |
Gene ID: MGYG000001925_4_97
Type: TC
Location: 104684 - 105598 (+)
Type: TC
Location: 104684 - 105598 (+)
Gene ID: MGYG000001925_4_98
Type: CAZyme
Location: 105672 - 107039 (-)
Type: CAZyme
Location: 105672 - 107039 (-)
Gene ID: MGYG000001925_4_99
Type: CAZyme
Location: 107058 - 108329 (-)
Type: CAZyme
Location: 107058 - 108329 (-)
Gene ID: MGYG000001925_4_100
Type: CAZyme
Location: 108345 - 110288 (-)
Type: CAZyme
Location: 108345 - 110288 (-)
Gene ID: MGYG000001925_4_101
Type: CAZyme
Location: 110553 - 112907 (-)
Type: CAZyme
Location: 110553 - 112907 (-)
Gene ID: MGYG000001925_4_102
Type: CAZyme
Location: 113120 - 115048 (+)
Type: CAZyme
Location: 113120 - 115048 (+)
Gene ID: MGYG000001925_4_103
Type:
Location: 115180 - 115635 (-)
Type:
Location: 115180 - 115635 (-)
Gene ID: MGYG000001925_4_104
Type: pfam
Location: 115632 - 116087 (-)
Type: pfam
Location: 115632 - 116087 (-)
Gene ID: MGYG000001925_4_105
Type: TC
Location: 116100 - 117677 (-)
Type: TC
Location: 116100 - 117677 (-)
Gene ID: MGYG000001925_4_106
Type:
Location: 117706 - 118899 (-)
Type:
Location: 117706 - 118899 (-)
Gene ID: MGYG000001925_4_107
Type:
Location: 119040 - 119174 (-)
Type:
Location: 119040 - 119174 (-)
Gene ID: MGYG000001925_4_108
Type: TC
Location: 119417 - 122410 (+)
Type: TC
Location: 119417 - 122410 (+)
Gene ID: MGYG000001925_4_109
Type: pfam
Location: 122433 - 124052 (+)
Type: pfam
Location: 122433 - 124052 (+)
Gene ID: MGYG000001925_4_110
Type: TC
Location: 124613 - 126661 (+)
Type: TC
Location: 124613 - 126661 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp900544675
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.