Cluster: MGYG000001925_CGC16
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 7
- Substrate: beta-glucan
- Genome ID: MGYG000001925
- CGC Family ID: CGCFAM_00101
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000001925_10 | MGYG000001925_10_38 | 42389 | 44737 | - | GH3 |
| CAZyme | MGYG000001925_10 | MGYG000001925_10_39 | 44868 | 47882 | - | GH95 |
| CAZyme | MGYG000001925_10 | MGYG000001925_10_40 | 47896 | 50793 | - | CBM91 | GH43_12 | GH43_16 |
| NULL(UNKNOWN) | MGYG000001925_10 | MGYG000001925_10_41 | 51115 | 51246 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000001925_10 | MGYG000001925_10_42 | 51406 | 54582 | + | 1.B.14.6.1 |
| pfam | MGYG000001925_10 | MGYG000001925_10_43 | 54608 | 56338 | + | SusD_RagB | SusD-like_3 |
| NULL(UNKNOWN) | MGYG000001925_10 | MGYG000001925_10_44 | 56360 | 58165 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000001925_10 | MGYG000001925_10_45 | 58201 | 60021 | + | GH5_4 |
| pfam | MGYG000001925_10 | MGYG000001925_10_46 | 60134 | 61099 | - | Mfa2 | Mfa_like_1 |
| TF | MGYG000001925_10 | MGYG000001925_10_47 | 61353 | 65360 | + | HTH_AraC | HTH_AraC |
| CAZyme | MGYG000001925_10 | MGYG000001925_10_48 | 65510 | 68392 | + | GH31_4 |
| CAZyme | MGYG000001925_10 | MGYG000001925_10_49 | 68561 | 71065 | + | GH2 |
| CAZyme | MGYG000001925_10 | MGYG000001925_10_50 | 71086 | 73308 | + | GH3 |
Gene ID: MGYG000001925_10_38
Type: CAZyme
Location: 42389 - 44737 (-)
Type: CAZyme
Location: 42389 - 44737 (-)
Gene ID: MGYG000001925_10_39
Type: CAZyme
Location: 44868 - 47882 (-)
Type: CAZyme
Location: 44868 - 47882 (-)
Gene ID: MGYG000001925_10_40
Type: CAZyme
Location: 47896 - 50793 (-)
Type: CAZyme
Location: 47896 - 50793 (-)
Gene ID: MGYG000001925_10_41
Type:
Location: 51115 - 51246 (+)
Type:
Location: 51115 - 51246 (+)
Gene ID: MGYG000001925_10_42
Type: TC
Location: 51406 - 54582 (+)
Type: TC
Location: 51406 - 54582 (+)
Gene ID: MGYG000001925_10_43
Type: pfam
Location: 54608 - 56338 (+)
Type: pfam
Location: 54608 - 56338 (+)
Gene ID: MGYG000001925_10_44
Type:
Location: 56360 - 58165 (+)
Type:
Location: 56360 - 58165 (+)
Gene ID: MGYG000001925_10_45
Type: CAZyme
Location: 58201 - 60021 (+)
Type: CAZyme
Location: 58201 - 60021 (+)
Gene ID: MGYG000001925_10_46
Type: pfam
Location: 60134 - 61099 (-)
Type: pfam
Location: 60134 - 61099 (-)
Gene ID: MGYG000001925_10_47
Type: TF
Location: 61353 - 65360 (+)
Type: TF
Location: 61353 - 65360 (+)
Gene ID: MGYG000001925_10_48
Type: CAZyme
Location: 65510 - 68392 (+)
Type: CAZyme
Location: 65510 - 68392 (+)
Gene ID: MGYG000001925_10_49
Type: CAZyme
Location: 68561 - 71065 (+)
Type: CAZyme
Location: 68561 - 71065 (+)
Gene ID: MGYG000001925_10_50
Type: CAZyme
Location: 71086 - 73308 (+)
Type: CAZyme
Location: 71086 - 73308 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp900544675
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.