Cluster: MGYG000001925_CGC10
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate:
- Genome ID: MGYG000001925
- CGC Family ID: CGCFAM_06682
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000001925_5 | MGYG000001925_5_10 | 12365 | 15691 | + | 1.B.14.6.1 |
| TC | MGYG000001925_5 | MGYG000001925_5_11 | 15705 | 17447 | + | 8.A.46.1.6 |
| CAZyme | MGYG000001925_5 | MGYG000001925_5_12 | 17593 | 20178 | + | GH115 |
| pfam | MGYG000001925_5 | MGYG000001925_5_13 | 20272 | 20751 | - | LuxS |
| pfam | MGYG000001925_5 | MGYG000001925_5_14 | 20765 | 21460 | - | PNP_UDP_1 |
| TC | MGYG000001925_5 | MGYG000001925_5_15 | 21607 | 24099 | + | 9.B.144.1.4 |
| CAZyme | MGYG000001925_5 | MGYG000001925_5_16 | 24272 | 25021 | - | GT2 |
| CAZyme | MGYG000001925_5 | MGYG000001925_5_17 | 25025 | 26287 | - | GT4 |
| CAZyme | MGYG000001925_5 | MGYG000001925_5_18 | 26343 | 27188 | + | GT23 |
| STP | MGYG000001925_5 | MGYG000001925_5_19 | 27222 | 27794 | + | NUDIX |
| NULL(UNKNOWN) | MGYG000001925_5 | MGYG000001925_5_20 | 27784 | 28692 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000001925_5 | MGYG000001925_5_21 | 28735 | 29625 | - | GT2 |
Gene ID: MGYG000001925_5_10
Type: TC
Location: 12365 - 15691 (+)
Type: TC
Location: 12365 - 15691 (+)
Gene ID: MGYG000001925_5_11
Type: TC
Location: 15705 - 17447 (+)
Type: TC
Location: 15705 - 17447 (+)
Gene ID: MGYG000001925_5_12
Type: CAZyme
Location: 17593 - 20178 (+)
Type: CAZyme
Location: 17593 - 20178 (+)
Gene ID: MGYG000001925_5_13
Type: pfam
Location: 20272 - 20751 (-)
Type: pfam
Location: 20272 - 20751 (-)
Gene ID: MGYG000001925_5_14
Type: pfam
Location: 20765 - 21460 (-)
Type: pfam
Location: 20765 - 21460 (-)
Gene ID: MGYG000001925_5_15
Type: TC
Location: 21607 - 24099 (+)
Type: TC
Location: 21607 - 24099 (+)
Gene ID: MGYG000001925_5_16
Type: CAZyme
Location: 24272 - 25021 (-)
Type: CAZyme
Location: 24272 - 25021 (-)
Gene ID: MGYG000001925_5_17
Type: CAZyme
Location: 25025 - 26287 (-)
Type: CAZyme
Location: 25025 - 26287 (-)
Gene ID: MGYG000001925_5_18
Type: CAZyme
Location: 26343 - 27188 (+)
Type: CAZyme
Location: 26343 - 27188 (+)
Gene ID: MGYG000001925_5_19
Type: STP
Location: 27222 - 27794 (+)
Type: STP
Location: 27222 - 27794 (+)
Gene ID: MGYG000001925_5_20
Type:
Location: 27784 - 28692 (-)
Type:
Location: 27784 - 28692 (-)
Gene ID: MGYG000001925_5_21
Type: CAZyme
Location: 28735 - 29625 (-)
Type: CAZyme
Location: 28735 - 29625 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp900544675
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.