Cluster: MGYG000001921_CGC20
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000001921
- CGC Family ID: CGCFAM_06293
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000001921_4 | MGYG000001921_4_216 | 256162 | 257421 | + | GH33 |
| TF | MGYG000001921_4 | MGYG000001921_4_217 | 257544 | 258626 | - | GntR |
| CAZyme | MGYG000001921_4 | MGYG000001921_4_218 | 258718 | 260034 | - | GH33 |
| NULL(UNKNOWN) | MGYG000001921_4 | MGYG000001921_4_219 | 260054 | 260767 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000001921_4 | MGYG000001921_4_220 | 261081 | 261416 | + | 2.A.7.1.4 |
Gene ID: MGYG000001921_4_216
Type: CAZyme
Location: 256162 - 257421 (+)
Type: CAZyme
Location: 256162 - 257421 (+)
Gene ID: MGYG000001921_4_217
Type: TF
Location: 257544 - 258626 (-)
Type: TF
Location: 257544 - 258626 (-)
Gene ID: MGYG000001921_4_218
Type: CAZyme
Location: 258718 - 260034 (-)
Type: CAZyme
Location: 258718 - 260034 (-)
Gene ID: MGYG000001921_4_219
Type:
Location: 260054 - 260767 (-)
Type:
Location: 260054 - 260767 (-)
Gene ID: MGYG000001921_4_220
Type: TC
Location: 261081 - 261416 (+)
Type: TC
Location: 261081 - 261416 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia sp905200945
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000001921_4_217 | vegetarian > omnivore | 1.00170 | 0.02115 |
| MGYG000001921_4_217 | vegetarian > vegan | 1.58946 | 0.00540 |
| MGYG000001921_4_219 | vegetarian > omnivore | 1.77468 | 0.02115 |
| MGYG000001921_4_219 | vegetarian > vegan | 2.42580 | 0.00540 |