Cluster: MGYG000001921_CGC17
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 7
- Substrate:
- Genome ID: MGYG000001921
- CGC Family ID: CGCFAM_01284
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000001921_4 | MGYG000001921_4_72 | 87464 | 89329 | + | 2.A.47.4.8 |
| NULL(UNKNOWN) | MGYG000001921_4 | MGYG000001921_4_73 | 89453 | 89686 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000001921_4 | MGYG000001921_4_74 | 90090 | 91121 | - | GT10 |
| TC | MGYG000001921_4 | MGYG000001921_4_75 | 91282 | 93354 | - | 9.B.97.5.1 |
| CAZyme | MGYG000001921_4 | MGYG000001921_4_76 | 93437 | 94435 | - | GT10 |
| CAZyme | MGYG000001921_4 | MGYG000001921_4_77 | 94555 | 95829 | - | GT4 |
| NULL(UNKNOWN) | MGYG000001921_4 | MGYG000001921_4_78 | 96281 | 97054 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000001921_4 | MGYG000001921_4_79 | 97115 | 98269 | - | GT2 |
| NULL(UNKNOWN) | MGYG000001921_4 | MGYG000001921_4_80 | 98295 | 98432 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | MGYG000001921_4 | MGYG000001921_4_81 | 98571 | 99557 | + | 3Beta_HSD | Epimerase | RmlD_sub_bind | GDP_Man_Dehyd |
| CAZyme | MGYG000001921_4 | MGYG000001921_4_82 | 99579 | 100553 | + | GT9 |
| CAZyme | MGYG000001921_4 | MGYG000001921_4_83 | 100550 | 101575 | + | GT2 |
| CAZyme | MGYG000001921_4 | MGYG000001921_4_84 | 101598 | 102572 | + | GT8 |
Gene ID: MGYG000001921_4_72
Type: TC
Location: 87464 - 89329 (+)
Type: TC
Location: 87464 - 89329 (+)
Gene ID: MGYG000001921_4_73
Type:
Location: 89453 - 89686 (+)
Type:
Location: 89453 - 89686 (+)
Gene ID: MGYG000001921_4_74
Type: CAZyme
Location: 90090 - 91121 (-)
Type: CAZyme
Location: 90090 - 91121 (-)
Gene ID: MGYG000001921_4_75
Type: TC
Location: 91282 - 93354 (-)
Type: TC
Location: 91282 - 93354 (-)
Gene ID: MGYG000001921_4_76
Type: CAZyme
Location: 93437 - 94435 (-)
Type: CAZyme
Location: 93437 - 94435 (-)
Gene ID: MGYG000001921_4_77
Type: CAZyme
Location: 94555 - 95829 (-)
Type: CAZyme
Location: 94555 - 95829 (-)
Gene ID: MGYG000001921_4_78
Type:
Location: 96281 - 97054 (-)
Type:
Location: 96281 - 97054 (-)
Gene ID: MGYG000001921_4_79
Type: CAZyme
Location: 97115 - 98269 (-)
Type: CAZyme
Location: 97115 - 98269 (-)
Gene ID: MGYG000001921_4_80
Type:
Location: 98295 - 98432 (-)
Type:
Location: 98295 - 98432 (-)
Gene ID: MGYG000001921_4_81
Type: pfam
Location: 98571 - 99557 (+)
Type: pfam
Location: 98571 - 99557 (+)
Gene ID: MGYG000001921_4_82
Type: CAZyme
Location: 99579 - 100553 (+)
Type: CAZyme
Location: 99579 - 100553 (+)
Gene ID: MGYG000001921_4_83
Type: CAZyme
Location: 100550 - 101575 (+)
Type: CAZyme
Location: 100550 - 101575 (+)
Gene ID: MGYG000001921_4_84
Type: CAZyme
Location: 101598 - 102572 (+)
Type: CAZyme
Location: 101598 - 102572 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia sp905200945
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000001921_4_73 | vegetarian > omnivore | 1.10188 | 0.02115 |
| MGYG000001921_4_73 | vegetarian > vegan | 1.46203 | 0.00540 |
| MGYG000001921_4_74 | vegetarian > vegan | 1.02604 | 0.00540 |