Cluster: MGYG000001777_CGC8
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 4
- Substrate:
- Genome ID: MGYG000001777
- CGC Family ID: CGCFAM_00208
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000001777_5 | MGYG000001777_5_15 | 14576 | 16036 | + | GT4 |
| pfam | MGYG000001777_5 | MGYG000001777_5_16 | 16061 | 17506 | + | PelG |
| pfam | MGYG000001777_5 | MGYG000001777_5_17 | 17527 | 17913 | + | DUF2304 |
| CAZyme | MGYG000001777_5 | MGYG000001777_5_18 | 17910 | 19124 | + | GT4 |
| CAZyme | MGYG000001777_5 | MGYG000001777_5_19 | 19127 | 19909 | + | GT2 |
| pfam | MGYG000001777_5 | MGYG000001777_5_20 | 19899 | 21137 | + | DUF4832 | DUF4874 |
| pfam | MGYG000001777_5 | MGYG000001777_5_21 | 21134 | 22552 | - | DUF4832 | DUF4874 |
| TC | MGYG000001777_5 | MGYG000001777_5_22 | 22626 | 24164 | + | 2.A.66.1.40 |
| pfam | MGYG000001777_5 | MGYG000001777_5_23 | 24116 | 25357 | + | NTP_transf_5 |
| NULL(UNKNOWN) | MGYG000001777_5 | MGYG000001777_5_24 | 25480 | 25854 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000001777_5 | MGYG000001777_5_25 | 25903 | 27678 | - | 3.A.1.135.5 |
| NULL(UNKNOWN) | MGYG000001777_5 | MGYG000001777_5_26 | 27693 | 28847 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | MGYG000001777_5 | MGYG000001777_5_27 | 28957 | 29379 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000001777_5 | MGYG000001777_5_28 | 29479 | 31605 | + | GH36 |
Gene ID: MGYG000001777_5_15
Type: CAZyme
Location: 14576 - 16036 (+)
Type: CAZyme
Location: 14576 - 16036 (+)
Gene ID: MGYG000001777_5_16
Type: pfam
Location: 16061 - 17506 (+)
Type: pfam
Location: 16061 - 17506 (+)
Gene ID: MGYG000001777_5_17
Type: pfam
Location: 17527 - 17913 (+)
Type: pfam
Location: 17527 - 17913 (+)
Gene ID: MGYG000001777_5_18
Type: CAZyme
Location: 17910 - 19124 (+)
Type: CAZyme
Location: 17910 - 19124 (+)
Gene ID: MGYG000001777_5_19
Type: CAZyme
Location: 19127 - 19909 (+)
Type: CAZyme
Location: 19127 - 19909 (+)
Gene ID: MGYG000001777_5_20
Type: pfam
Location: 19899 - 21137 (+)
Type: pfam
Location: 19899 - 21137 (+)
Gene ID: MGYG000001777_5_21
Type: pfam
Location: 21134 - 22552 (-)
Type: pfam
Location: 21134 - 22552 (-)
Gene ID: MGYG000001777_5_22
Type: TC
Location: 22626 - 24164 (+)
Type: TC
Location: 22626 - 24164 (+)
Gene ID: MGYG000001777_5_23
Type: pfam
Location: 24116 - 25357 (+)
Type: pfam
Location: 24116 - 25357 (+)
Gene ID: MGYG000001777_5_24
Type:
Location: 25480 - 25854 (+)
Type:
Location: 25480 - 25854 (+)
Gene ID: MGYG000001777_5_25
Type: TC
Location: 25903 - 27678 (-)
Type: TC
Location: 25903 - 27678 (-)
Gene ID: MGYG000001777_5_26
Type:
Location: 27693 - 28847 (-)
Type:
Location: 27693 - 28847 (-)
Gene ID: MGYG000001777_5_27
Type:
Location: 28957 - 29379 (+)
Type:
Location: 28957 - 29379 (+)
Gene ID: MGYG000001777_5_28
Type: CAZyme
Location: 29479 - 31605 (+)
Type: CAZyme
Location: 29479 - 31605 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Eubacterium_F
Species
Eubacterium_F sp000434115
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000001777_5_18 | vegetarian > vegan | 1.45602 | 0.00467 |
| MGYG000001777_5_19 | vegetarian > omnivore | 1.29747 | 0.03451 |
| MGYG000001777_5_19 | vegetarian > vegan | 2.38641 | 0.00467 |
| MGYG000001777_5_25 | vegetarian > vegan | 1.78959 | 0.00467 |
| MGYG000001777_5_27 | vegetarian > omnivore | 1.93503 | 0.03451 |
| MGYG000001777_5_27 | vegetarian > vegan | 5.11979 | 0.00467 |