Cluster: MGYG000001759_CGC6
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000001759
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000001759_2 | MGYG000001759_2_113 | 124146 | 125840 | + | 4.A.3.1.1 |
| pfam | MGYG000001759_2 | MGYG000001759_2_114 | 126003 | 126161 | + | DeoRC |
| pfam | MGYG000001759_2 | MGYG000001759_2_115 | 126269 | 127501 | - | Fic |
| CAZyme | MGYG000001759_2 | MGYG000001759_2_116 | 127867 | 129288 | - | GH1 |
| TC | MGYG000001759_2 | MGYG000001759_2_117 | 129365 | 131143 | - | 4.A.3.1.1 |
| TF | MGYG000001759_2 | MGYG000001759_2_118 | 131419 | 132429 | + | LacI |
| TC | MGYG000001759_2 | MGYG000001759_2_119 | 132763 | 134523 | - | 4.A.3.1.1 |
| CAZyme | MGYG000001759_2 | MGYG000001759_2_120 | 134700 | 136142 | - | GH1 |
| TF | MGYG000001759_2 | MGYG000001759_2_121 | 136484 | 137521 | + | LacI |
| CAZyme | MGYG000001759_2 | MGYG000001759_2_122 | 137784 | 139223 | - | GH1 |
| TC | MGYG000001759_2 | MGYG000001759_2_123 | 139290 | 141062 | - | 4.A.3.1.1 |
| TF | MGYG000001759_2 | MGYG000001759_2_124 | 141420 | 142424 | + | LacI |
| TC | MGYG000001759_2 | MGYG000001759_2_125 | 142639 | 142977 | + | 4.A.3.1.2 |
Gene ID: MGYG000001759_2_113
Type: TC
Location: 124146 - 125840 (+)
Type: TC
Location: 124146 - 125840 (+)
Gene ID: MGYG000001759_2_114
Type: pfam
Location: 126003 - 126161 (+)
Type: pfam
Location: 126003 - 126161 (+)
Gene ID: MGYG000001759_2_115
Type: pfam
Location: 126269 - 127501 (-)
Type: pfam
Location: 126269 - 127501 (-)
Gene ID: MGYG000001759_2_116
Type: CAZyme
Location: 127867 - 129288 (-)
Type: CAZyme
Location: 127867 - 129288 (-)
Gene ID: MGYG000001759_2_117
Type: TC
Location: 129365 - 131143 (-)
Type: TC
Location: 129365 - 131143 (-)
Gene ID: MGYG000001759_2_118
Type: TF
Location: 131419 - 132429 (+)
Type: TF
Location: 131419 - 132429 (+)
Gene ID: MGYG000001759_2_119
Type: TC
Location: 132763 - 134523 (-)
Type: TC
Location: 132763 - 134523 (-)
Gene ID: MGYG000001759_2_120
Type: CAZyme
Location: 134700 - 136142 (-)
Type: CAZyme
Location: 134700 - 136142 (-)
Gene ID: MGYG000001759_2_121
Type: TF
Location: 136484 - 137521 (+)
Type: TF
Location: 136484 - 137521 (+)
Gene ID: MGYG000001759_2_122
Type: CAZyme
Location: 137784 - 139223 (-)
Type: CAZyme
Location: 137784 - 139223 (-)
Gene ID: MGYG000001759_2_123
Type: TC
Location: 139290 - 141062 (-)
Type: TC
Location: 139290 - 141062 (-)
Gene ID: MGYG000001759_2_124
Type: TF
Location: 141420 - 142424 (+)
Type: TF
Location: 141420 - 142424 (+)
Gene ID: MGYG000001759_2_125
Type: TC
Location: 142639 - 142977 (+)
Type: TC
Location: 142639 - 142977 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902472315
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000001759_2_121 | vegetarian > omnivore | 1.00551 | 0.02258 |