Cluster: MGYG000001753_CGC2
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 7
- Substrate:
- Genome ID: MGYG000001753
- CGC Family ID: CGCFAM_00003
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000001753_1 | MGYG000001753_1_31 | 40052 | 41173 | + | GT4 |
| NULL(UNKNOWN) | MGYG000001753_1 | MGYG000001753_1_32 | 41878 | 43122 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000001753_1 | MGYG000001753_1_33 | 43196 | 44077 | - | GT2 |
| pfam | MGYG000001753_1 | MGYG000001753_1_34 | 44268 | 45113 | + | LicD |
| CAZyme | MGYG000001753_1 | MGYG000001753_1_35 | 45115 | 46266 | + | GT4 |
| pfam | MGYG000001753_1 | MGYG000001753_1_36 | 46275 | 47315 | + | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | NAD_binding_10 | GDP_Man_Dehyd |
| CAZyme | MGYG000001753_1 | MGYG000001753_1_37 | 47421 | 48200 | + | GT2 |
| pfam | MGYG000001753_1 | MGYG000001753_1_38 | 48289 | 48540 | + | DUF2304 |
| pfam | MGYG000001753_1 | MGYG000001753_1_39 | 48604 | 50679 | + | DUF6541 |
| CAZyme | MGYG000001753_1 | MGYG000001753_1_40 | 50891 | 52006 | + | GT2 |
| CAZyme | MGYG000001753_1 | MGYG000001753_1_41 | 52008 | 53186 | + | GT2 |
| pfam | MGYG000001753_1 | MGYG000001753_1_42 | 53307 | 54392 | - | Acyl_transf_3 |
| CAZyme | MGYG000001753_1 | MGYG000001753_1_43 | 54399 | 55352 | - | GT2 |
| TC | MGYG000001753_1 | MGYG000001753_1_44 | 55499 | 56344 | + | 3.A.1.103.6 |
| TC | MGYG000001753_1 | MGYG000001753_1_45 | 56356 | 57123 | + | 3.A.1.103.1 |
Gene ID: MGYG000001753_1_31
Type: CAZyme
Location: 40052 - 41173 (+)
Type: CAZyme
Location: 40052 - 41173 (+)
Gene ID: MGYG000001753_1_32
Type:
Location: 41878 - 43122 (-)
Type:
Location: 41878 - 43122 (-)
Gene ID: MGYG000001753_1_33
Type: CAZyme
Location: 43196 - 44077 (-)
Type: CAZyme
Location: 43196 - 44077 (-)
Gene ID: MGYG000001753_1_34
Type: pfam
Location: 44268 - 45113 (+)
Type: pfam
Location: 44268 - 45113 (+)
Gene ID: MGYG000001753_1_35
Type: CAZyme
Location: 45115 - 46266 (+)
Type: CAZyme
Location: 45115 - 46266 (+)
Gene ID: MGYG000001753_1_36
Type: pfam
Location: 46275 - 47315 (+)
Type: pfam
Location: 46275 - 47315 (+)
Gene ID: MGYG000001753_1_37
Type: CAZyme
Location: 47421 - 48200 (+)
Type: CAZyme
Location: 47421 - 48200 (+)
Gene ID: MGYG000001753_1_38
Type: pfam
Location: 48289 - 48540 (+)
Type: pfam
Location: 48289 - 48540 (+)
Gene ID: MGYG000001753_1_39
Type: pfam
Location: 48604 - 50679 (+)
Type: pfam
Location: 48604 - 50679 (+)
Gene ID: MGYG000001753_1_40
Type: CAZyme
Location: 50891 - 52006 (+)
Type: CAZyme
Location: 50891 - 52006 (+)
Gene ID: MGYG000001753_1_41
Type: CAZyme
Location: 52008 - 53186 (+)
Type: CAZyme
Location: 52008 - 53186 (+)
Gene ID: MGYG000001753_1_42
Type: pfam
Location: 53307 - 54392 (-)
Type: pfam
Location: 53307 - 54392 (-)
Gene ID: MGYG000001753_1_43
Type: CAZyme
Location: 54399 - 55352 (-)
Type: CAZyme
Location: 54399 - 55352 (-)
Gene ID: MGYG000001753_1_44
Type: TC
Location: 55499 - 56344 (+)
Type: TC
Location: 55499 - 56344 (+)
Gene ID: MGYG000001753_1_45
Type: TC
Location: 56356 - 57123 (+)
Type: TC
Location: 56356 - 57123 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900752215
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.