Cluster: MGYG000001753_CGC1
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 6
- Substrate:
- Genome ID: MGYG000001753
- CGC Family ID: CGCFAM_00398
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000001753_1 | MGYG000001753_1_18 | 18989 | 20011 | - | GT2 |
| pfam | MGYG000001753_1 | MGYG000001753_1_19 | 20182 | 21312 | - | Acyl_transf_3 |
| CAZyme | MGYG000001753_1 | MGYG000001753_1_20 | 21425 | 22528 | + | GT2 |
| CAZyme | MGYG000001753_1 | MGYG000001753_1_21 | 22535 | 23575 | + | GT2 |
| CAZyme | MGYG000001753_1 | MGYG000001753_1_22 | 23650 | 24768 | + | GT2 |
| CAZyme | MGYG000001753_1 | MGYG000001753_1_23 | 24781 | 25848 | + | GT2 |
| pfam | MGYG000001753_1 | MGYG000001753_1_24 | 26501 | 27598 | + | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_2 | Choline_bind_3 | Choline_bind_3 | Choline_bind_3 | Choline_bind_3 |
| pfam | MGYG000001753_1 | MGYG000001753_1_25 | 27679 | 29889 | + | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_3 | Choline_bind_3 | Choline_bind_3 |
| CAZyme | MGYG000001753_1 | MGYG000001753_1_26 | 30153 | 32714 | + | GH25 |
| TC | MGYG000001753_1 | MGYG000001753_1_27 | 32777 | 33718 | - | 2.A.7.18.1 |
Gene ID: MGYG000001753_1_18
Type: CAZyme
Location: 18989 - 20011 (-)
Type: CAZyme
Location: 18989 - 20011 (-)
Gene ID: MGYG000001753_1_19
Type: pfam
Location: 20182 - 21312 (-)
Type: pfam
Location: 20182 - 21312 (-)
Gene ID: MGYG000001753_1_20
Type: CAZyme
Location: 21425 - 22528 (+)
Type: CAZyme
Location: 21425 - 22528 (+)
Gene ID: MGYG000001753_1_21
Type: CAZyme
Location: 22535 - 23575 (+)
Type: CAZyme
Location: 22535 - 23575 (+)
Gene ID: MGYG000001753_1_22
Type: CAZyme
Location: 23650 - 24768 (+)
Type: CAZyme
Location: 23650 - 24768 (+)
Gene ID: MGYG000001753_1_23
Type: CAZyme
Location: 24781 - 25848 (+)
Type: CAZyme
Location: 24781 - 25848 (+)
Gene ID: MGYG000001753_1_24
Type: pfam
Location: 26501 - 27598 (+)
Type: pfam
Location: 26501 - 27598 (+)
Gene ID: MGYG000001753_1_25
Type: pfam
Location: 27679 - 29889 (+)
Type: pfam
Location: 27679 - 29889 (+)
Gene ID: MGYG000001753_1_26
Type: CAZyme
Location: 30153 - 32714 (+)
Type: CAZyme
Location: 30153 - 32714 (+)
Gene ID: MGYG000001753_1_27
Type: TC
Location: 32777 - 33718 (-)
Type: TC
Location: 32777 - 33718 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900752215
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000001753_1_19 | vegan > omnivore | 1.69240 | 0.01057 |
| MGYG000001753_1_19 | vegetarian > omnivore | 1.49815 | 0.01882 |