Cluster: MGYG000001741_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000001741
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000001741_1 | MGYG000001741_1_89 | 93946 | 94713 | - | 3.A.1.103.1 |
| TC | MGYG000001741_1 | MGYG000001741_1_90 | 94726 | 95571 | - | 3.A.1.103.6 |
| CAZyme | MGYG000001741_1 | MGYG000001741_1_91 | 95733 | 96662 | + | GT81 |
| CAZyme | MGYG000001741_1 | MGYG000001741_1_92 | 96694 | 98538 | - | GT2 |
| CAZyme | MGYG000001741_1 | MGYG000001741_1_93 | 98708 | 100579 | + | GT2 |
Gene ID: MGYG000001741_1_89
Type: TC
Location: 93946 - 94713 (-)
Type: TC
Location: 93946 - 94713 (-)
Gene ID: MGYG000001741_1_90
Type: TC
Location: 94726 - 95571 (-)
Type: TC
Location: 94726 - 95571 (-)
Gene ID: MGYG000001741_1_91
Type: CAZyme
Location: 95733 - 96662 (+)
Type: CAZyme
Location: 95733 - 96662 (+)
Gene ID: MGYG000001741_1_92
Type: CAZyme
Location: 96694 - 98538 (-)
Type: CAZyme
Location: 96694 - 98538 (-)
Gene ID: MGYG000001741_1_93
Type: CAZyme
Location: 98708 - 100579 (+)
Type: CAZyme
Location: 98708 - 100579 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp958402855
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000001741_1_89 | vegan > omnivore | 1.00057 | 0.00566 |
| MGYG000001741_1_90 | vegan > omnivore | 1.53313 | 0.00566 |
| MGYG000001741_1_91 | vegan > omnivore | 2.05142 | 0.00566 |
| MGYG000001741_1_92 | vegan > omnivore | 16.96376 | 0.00566 |