Cluster: MGYG000001681_CGC19
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000001681
- CGC Family ID: CGCFAM_04702
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000001681_189 | MGYG000001681_189_1 | 176 | 1096 | + | 3.A.1.1.20 |
| TC | MGYG000001681_189 | MGYG000001681_189_2 | 1109 | 2002 | + | 3.A.1.1.29 |
| STP | MGYG000001681_189 | MGYG000001681_189_3 | 2127 | 3677 | + | SBP_bac_1 |
| CAZyme | MGYG000001681_189 | MGYG000001681_189_4 | 3758 | 4555 | + | CE1 |
Gene ID: MGYG000001681_189_1
Type: TC
Location: 176 - 1096 (+)
Type: TC
Location: 176 - 1096 (+)
Gene ID: MGYG000001681_189_2
Type: TC
Location: 1109 - 2002 (+)
Type: TC
Location: 1109 - 2002 (+)
Gene ID: MGYG000001681_189_3
Type: STP
Location: 2127 - 3677 (+)
Type: STP
Location: 2127 - 3677 (+)
Gene ID: MGYG000001681_189_4
Type: CAZyme
Location: 3758 - 4555 (+)
Type: CAZyme
Location: 3758 - 4555 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus
Species
Ruminococcus sp900761275
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000001681_189_1 | vegetarian > omnivore | 2.19187 | 0.04105 |
| MGYG000001681_189_1 | vegetarian > vegan | 3.67246 | 0.04185 |
| MGYG000001681_189_2 | vegetarian > omnivore | 4.61276 | 0.04105 |
| MGYG000001681_189_2 | vegetarian > vegan | 2.88238 | 0.04185 |
| MGYG000001681_189_3 | vegetarian > omnivore | 1.70134 | 0.04105 |
| MGYG000001681_189_3 | vegetarian > vegan | 3.08166 | 0.04185 |
| MGYG000001681_189_4 | vegetarian > omnivore | 2.46087 | 0.04105 |
| MGYG000001681_189_4 | vegetarian > vegan | 3.08761 | 0.04185 |