Cluster: MGYG000001661_CGC30
🧬 Cluster Details
- Gene Count: 26
- CAZyme Count: 17
- Substrate: xylan
- Genome ID: MGYG000001661
- CGC Family ID: CGCFAM_00273
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000001661_9 | MGYG000001661_9_1 | 1 | 1401 | + | CBM32 | GH2 |
| CAZyme | MGYG000001661_9 | MGYG000001661_9_2 | 1497 | 3950 | - | GH31_4 |
| CAZyme | MGYG000001661_9 | MGYG000001661_9_3 | 3980 | 5356 | - | CBM6 | GH43_29 |
| TF | MGYG000001661_9 | MGYG000001661_9_4 | 5468 | 8578 | - | HTH_AraC |
| NULL(UNKNOWN) | MGYG000001661_9 | MGYG000001661_9_5 | 8575 | 8715 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000001661_9 | MGYG000001661_9_6 | 8778 | 11411 | + | GH115 |
| CAZyme | MGYG000001661_9 | MGYG000001661_9_7 | 11457 | 13964 | + | CBM6 | CE1 | GH43_29 |
| CAZyme | MGYG000001661_9 | MGYG000001661_9_8 | 13995 | 16439 | + | CE15 | GH8 |
| CAZyme | MGYG000001661_9 | MGYG000001661_9_9 | 16463 | 19714 | + | CE6 | GH95 |
| CAZyme | MGYG000001661_9 | MGYG000001661_9_10 | 19752 | 21341 | + | CBM91 | GH43_10 |
| CAZyme | MGYG000001661_9 | MGYG000001661_9_11 | 21356 | 23944 | + | GH115 |
| TF | MGYG000001661_9 | MGYG000001661_9_12 | 23925 | 28016 | - | HTH_AraC |
| NULL(UNKNOWN) | MGYG000001661_9 | MGYG000001661_9_13 | 28065 | 28523 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000001661_9 | MGYG000001661_9_14 | 28559 | 30535 | - | GH67 |
| CAZyme | MGYG000001661_9 | MGYG000001661_9_15 | 30609 | 31580 | - | GH43_1 |
| CAZyme | MGYG000001661_9 | MGYG000001661_9_16 | 31765 | 34497 | - | CBM91 | GH10 | GH43_12 |
| TC | MGYG000001661_9 | MGYG000001661_9_17 | 34519 | 36015 | - | 2.A.2.3.4 |
| CAZyme | MGYG000001661_9 | MGYG000001661_9_18 | 36060 | 37691 | - | CE20 | CE20 |
| CAZyme | MGYG000001661_9 | MGYG000001661_9_19 | 37737 | 39398 | - | GH35 |
| CAZyme | MGYG000001661_9 | MGYG000001661_9_20 | 39693 | 41573 | - | GH10 |
| pfam | MGYG000001661_9 | MGYG000001661_9_21 | 41606 | 43021 | - | SGBP_B_XBD |
| pfam | MGYG000001661_9 | MGYG000001661_9_22 | 43037 | 44722 | - | SusD_RagB | SusD-like_3 |
| TC | MGYG000001661_9 | MGYG000001661_9_23 | 44744 | 47893 | - | 1.B.14.6.1 |
| TF | MGYG000001661_9 | MGYG000001661_9_24 | 48207 | 52289 | + | HTH_AraC |
| CAZyme | MGYG000001661_9 | MGYG000001661_9_25 | 52289 | 55138 | + | PL40 |
| CAZyme | MGYG000001661_9 | MGYG000001661_9_26 | 55205 | 56551 | + | GH28 |
Gene ID: MGYG000001661_9_1
Type: CAZyme
Location: 1 - 1401 (+)
Type: CAZyme
Location: 1 - 1401 (+)
Gene ID: MGYG000001661_9_2
Type: CAZyme
Location: 1497 - 3950 (-)
Type: CAZyme
Location: 1497 - 3950 (-)
Gene ID: MGYG000001661_9_3
Type: CAZyme
Location: 3980 - 5356 (-)
Type: CAZyme
Location: 3980 - 5356 (-)
Gene ID: MGYG000001661_9_4
Type: TF
Location: 5468 - 8578 (-)
Type: TF
Location: 5468 - 8578 (-)
Gene ID: MGYG000001661_9_5
Type:
Location: 8575 - 8715 (-)
Type:
Location: 8575 - 8715 (-)
Gene ID: MGYG000001661_9_6
Type: CAZyme
Location: 8778 - 11411 (+)
Type: CAZyme
Location: 8778 - 11411 (+)
Gene ID: MGYG000001661_9_7
Type: CAZyme
Location: 11457 - 13964 (+)
Type: CAZyme
Location: 11457 - 13964 (+)
Gene ID: MGYG000001661_9_8
Type: CAZyme
Location: 13995 - 16439 (+)
Type: CAZyme
Location: 13995 - 16439 (+)
Gene ID: MGYG000001661_9_9
Type: CAZyme
Location: 16463 - 19714 (+)
Type: CAZyme
Location: 16463 - 19714 (+)
Gene ID: MGYG000001661_9_10
Type: CAZyme
Location: 19752 - 21341 (+)
Type: CAZyme
Location: 19752 - 21341 (+)
Gene ID: MGYG000001661_9_11
Type: CAZyme
Location: 21356 - 23944 (+)
Type: CAZyme
Location: 21356 - 23944 (+)
Gene ID: MGYG000001661_9_12
Type: TF
Location: 23925 - 28016 (-)
Type: TF
Location: 23925 - 28016 (-)
Gene ID: MGYG000001661_9_13
Type:
Location: 28065 - 28523 (+)
Type:
Location: 28065 - 28523 (+)
Gene ID: MGYG000001661_9_14
Type: CAZyme
Location: 28559 - 30535 (-)
Type: CAZyme
Location: 28559 - 30535 (-)
Gene ID: MGYG000001661_9_15
Type: CAZyme
Location: 30609 - 31580 (-)
Type: CAZyme
Location: 30609 - 31580 (-)
Gene ID: MGYG000001661_9_16
Type: CAZyme
Location: 31765 - 34497 (-)
Type: CAZyme
Location: 31765 - 34497 (-)
Gene ID: MGYG000001661_9_17
Type: TC
Location: 34519 - 36015 (-)
Type: TC
Location: 34519 - 36015 (-)
Gene ID: MGYG000001661_9_18
Type: CAZyme
Location: 36060 - 37691 (-)
Type: CAZyme
Location: 36060 - 37691 (-)
Gene ID: MGYG000001661_9_19
Type: CAZyme
Location: 37737 - 39398 (-)
Type: CAZyme
Location: 37737 - 39398 (-)
Gene ID: MGYG000001661_9_20
Type: CAZyme
Location: 39693 - 41573 (-)
Type: CAZyme
Location: 39693 - 41573 (-)
Gene ID: MGYG000001661_9_21
Type: pfam
Location: 41606 - 43021 (-)
Type: pfam
Location: 41606 - 43021 (-)
Gene ID: MGYG000001661_9_22
Type: pfam
Location: 43037 - 44722 (-)
Type: pfam
Location: 43037 - 44722 (-)
Gene ID: MGYG000001661_9_23
Type: TC
Location: 44744 - 47893 (-)
Type: TC
Location: 44744 - 47893 (-)
Gene ID: MGYG000001661_9_24
Type: TF
Location: 48207 - 52289 (+)
Type: TF
Location: 48207 - 52289 (+)
Gene ID: MGYG000001661_9_25
Type: CAZyme
Location: 52289 - 55138 (+)
Type: CAZyme
Location: 52289 - 55138 (+)
Gene ID: MGYG000001661_9_26
Type: CAZyme
Location: 55205 - 56551 (+)
Type: CAZyme
Location: 55205 - 56551 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides gallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.