Cluster: MGYG000001661_CGC3
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate: pectin
- Genome ID: MGYG000001661
- CGC Family ID: CGCFAM_00298
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000001661_1 | MGYG000001661_1_45 | 70558 | 73749 | - | 1.B.14.6.1 |
| TF | MGYG000001661_1 | MGYG000001661_1_46 | 74023 | 74949 | - | HTH_AraC |
| CAZyme | MGYG000001661_1 | MGYG000001661_1_47 | 75093 | 76415 | - | GH105 |
| pfam | MGYG000001661_1 | MGYG000001661_1_48 | 76437 | 77582 | - | Fe-ADH | Fe-ADH_2 | ADH_Fe_C |
| pfam | MGYG000001661_1 | MGYG000001661_1_49 | 77607 | 78416 | - | Aldolase_II |
| TC | MGYG000001661_1 | MGYG000001661_1_50 | 78454 | 79485 | - | 2.A.7.6.1 |
| pfam | MGYG000001661_1 | MGYG000001661_1_51 | 79577 | 80830 | - | RhaA |
| pfam | MGYG000001661_1 | MGYG000001661_1_52 | 80872 | 82338 | - | FGGY_N | FGGY_C |
| CAZyme | MGYG000001661_1 | MGYG000001661_1_53 | 82473 | 83993 | - | GH28 |
| CAZyme | MGYG000001661_1 | MGYG000001661_1_54 | 84047 | 85882 | - | PL11 |
| CAZyme | MGYG000001661_1 | MGYG000001661_1_55 | 85888 | 88677 | - | GH106 |
| CAZyme | MGYG000001661_1 | MGYG000001661_1_56 | 88683 | 91205 | - | CE20 | GH105 |
Gene ID: MGYG000001661_1_45
Type: TC
Location: 70558 - 73749 (-)
Type: TC
Location: 70558 - 73749 (-)
Gene ID: MGYG000001661_1_46
Type: TF
Location: 74023 - 74949 (-)
Type: TF
Location: 74023 - 74949 (-)
Gene ID: MGYG000001661_1_47
Type: CAZyme
Location: 75093 - 76415 (-)
Type: CAZyme
Location: 75093 - 76415 (-)
Gene ID: MGYG000001661_1_48
Type: pfam
Location: 76437 - 77582 (-)
Type: pfam
Location: 76437 - 77582 (-)
Gene ID: MGYG000001661_1_49
Type: pfam
Location: 77607 - 78416 (-)
Type: pfam
Location: 77607 - 78416 (-)
Gene ID: MGYG000001661_1_50
Type: TC
Location: 78454 - 79485 (-)
Type: TC
Location: 78454 - 79485 (-)
Gene ID: MGYG000001661_1_51
Type: pfam
Location: 79577 - 80830 (-)
Type: pfam
Location: 79577 - 80830 (-)
Gene ID: MGYG000001661_1_52
Type: pfam
Location: 80872 - 82338 (-)
Type: pfam
Location: 80872 - 82338 (-)
Gene ID: MGYG000001661_1_53
Type: CAZyme
Location: 82473 - 83993 (-)
Type: CAZyme
Location: 82473 - 83993 (-)
Gene ID: MGYG000001661_1_54
Type: CAZyme
Location: 84047 - 85882 (-)
Type: CAZyme
Location: 84047 - 85882 (-)
Gene ID: MGYG000001661_1_55
Type: CAZyme
Location: 85888 - 88677 (-)
Type: CAZyme
Location: 85888 - 88677 (-)
Gene ID: MGYG000001661_1_56
Type: CAZyme
Location: 88683 - 91205 (-)
Type: CAZyme
Location: 88683 - 91205 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides gallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.