Cluster: MGYG000001628_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000001628
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000001628_1 | MGYG000001628_1_33 | 35088 | 35576 | + | 4.A.6.1.9 |
| TC | MGYG000001628_1 | MGYG000001628_1_34 | 35649 | 36506 | + | 4.A.6.1.1 |
| TC | MGYG000001628_1 | MGYG000001628_1_35 | 36506 | 37333 | + | 4.A.6.1.6 |
| NULL(UNKNOWN) | MGYG000001628_1 | MGYG000001628_1_36 | 37530 | 37856 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | MGYG000001628_1 | MGYG000001628_1_37 | 37961 | 38401 | + | MarR |
| CAZyme | MGYG000001628_1 | MGYG000001628_1_38 | 38916 | 45329 | + | GH31_18 |
Gene ID: MGYG000001628_1_33
Type: TC
Location: 35088 - 35576 (+)
Type: TC
Location: 35088 - 35576 (+)
Gene ID: MGYG000001628_1_34
Type: TC
Location: 35649 - 36506 (+)
Type: TC
Location: 35649 - 36506 (+)
Gene ID: MGYG000001628_1_35
Type: TC
Location: 36506 - 37333 (+)
Type: TC
Location: 36506 - 37333 (+)
Gene ID: MGYG000001628_1_36
Type:
Location: 37530 - 37856 (+)
Type:
Location: 37530 - 37856 (+)
Gene ID: MGYG000001628_1_37
Type: TF
Location: 37961 - 38401 (+)
Type: TF
Location: 37961 - 38401 (+)
Gene ID: MGYG000001628_1_38
Type: CAZyme
Location: 38916 - 45329 (+)
Type: CAZyme
Location: 38916 - 45329 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900549345
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000001628_1_38 | vegetarian > omnivore | 1.38693 | 0.03390 |
| MGYG000001628_1_38 | vegetarian > vegan | 2.06983 | 0.01144 |