Cluster: MGYG000001599_CGC2
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 8
- Substrate: pectin
- Genome ID: MGYG000001599
- CGC Family ID: CGCFAM_00108
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000001599_1 | MGYG000001599_1_16 | 25664 | 28675 | + | 1.B.14.6.1 |
| TC | MGYG000001599_1 | MGYG000001599_1_17 | 28709 | 30193 | + | 8.A.46.1.3 |
| pfam | MGYG000001599_1 | MGYG000001599_1_18 | 30219 | 32054 | + | SusE | SusF_SusE | SusF_SusE | SusF_SusE |
| CAZyme | MGYG000001599_1 | MGYG000001599_1_19 | 32082 | 33869 | + | GH66 |
| CAZyme | MGYG000001599_1 | MGYG000001599_1_20 | 33877 | 36042 | + | GH97 |
| CAZyme | MGYG000001599_1 | MGYG000001599_1_21 | 36147 | 38462 | - | PL21_1 |
| pfam | MGYG000001599_1 | MGYG000001599_1_22 | 38722 | 38934 | + | TatA_B_E |
| TF | MGYG000001599_1 | MGYG000001599_1_23 | 39049 | 43023 | + | HTH_AraC |
| CAZyme | MGYG000001599_1 | MGYG000001599_1_24 | 43259 | 44794 | - | GH51_1 |
| CAZyme | MGYG000001599_1 | MGYG000001599_1_25 | 44798 | 46777 | - | GH51_2 |
| CAZyme | MGYG000001599_1 | MGYG000001599_1_26 | 46840 | 47820 | - | GH43_29 |
| TF | MGYG000001599_1 | MGYG000001599_1_27 | 47989 | 52209 | + | HTH_AraC |
| TC | MGYG000001599_1 | MGYG000001599_1_28 | 52621 | 55830 | + | 1.B.14.6.1 |
| pfam | MGYG000001599_1 | MGYG000001599_1_29 | 55867 | 57618 | + | SusD_RagB | SusD-like_3 |
| pfam | MGYG000001599_1 | MGYG000001599_1_30 | 57642 | 59435 | + | Big_3 |
| CAZyme | MGYG000001599_1 | MGYG000001599_1_31 | 59505 | 61457 | + | GH43_4 |
| CAZyme | MGYG000001599_1 | MGYG000001599_1_32 | 61461 | 62474 | + | GH43_5 |
Gene ID: MGYG000001599_1_16
Type: TC
Location: 25664 - 28675 (+)
Type: TC
Location: 25664 - 28675 (+)
Gene ID: MGYG000001599_1_17
Type: TC
Location: 28709 - 30193 (+)
Type: TC
Location: 28709 - 30193 (+)
Gene ID: MGYG000001599_1_18
Type: pfam
Location: 30219 - 32054 (+)
Type: pfam
Location: 30219 - 32054 (+)
Gene ID: MGYG000001599_1_19
Type: CAZyme
Location: 32082 - 33869 (+)
Type: CAZyme
Location: 32082 - 33869 (+)
Gene ID: MGYG000001599_1_20
Type: CAZyme
Location: 33877 - 36042 (+)
Type: CAZyme
Location: 33877 - 36042 (+)
Gene ID: MGYG000001599_1_21
Type: CAZyme
Location: 36147 - 38462 (-)
Type: CAZyme
Location: 36147 - 38462 (-)
Gene ID: MGYG000001599_1_22
Type: pfam
Location: 38722 - 38934 (+)
Type: pfam
Location: 38722 - 38934 (+)
Gene ID: MGYG000001599_1_23
Type: TF
Location: 39049 - 43023 (+)
Type: TF
Location: 39049 - 43023 (+)
Gene ID: MGYG000001599_1_24
Type: CAZyme
Location: 43259 - 44794 (-)
Type: CAZyme
Location: 43259 - 44794 (-)
Gene ID: MGYG000001599_1_25
Type: CAZyme
Location: 44798 - 46777 (-)
Type: CAZyme
Location: 44798 - 46777 (-)
Gene ID: MGYG000001599_1_26
Type: CAZyme
Location: 46840 - 47820 (-)
Type: CAZyme
Location: 46840 - 47820 (-)
Gene ID: MGYG000001599_1_27
Type: TF
Location: 47989 - 52209 (+)
Type: TF
Location: 47989 - 52209 (+)
Gene ID: MGYG000001599_1_28
Type: TC
Location: 52621 - 55830 (+)
Type: TC
Location: 52621 - 55830 (+)
Gene ID: MGYG000001599_1_29
Type: pfam
Location: 55867 - 57618 (+)
Type: pfam
Location: 55867 - 57618 (+)
Gene ID: MGYG000001599_1_30
Type: pfam
Location: 57642 - 59435 (+)
Type: pfam
Location: 57642 - 59435 (+)
Gene ID: MGYG000001599_1_31
Type: CAZyme
Location: 59505 - 61457 (+)
Type: CAZyme
Location: 59505 - 61457 (+)
Gene ID: MGYG000001599_1_32
Type: CAZyme
Location: 61461 - 62474 (+)
Type: CAZyme
Location: 61461 - 62474 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp900544075
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.