Cluster: MGYG000001587_CGC5
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000001587
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000001587_15 | MGYG000001587_15_7 | 7879 | 9267 | + | GH1 |
| TF | MGYG000001587_15 | MGYG000001587_15_8 | 9288 | 10109 | - | HTH_6 |
| pfam | MGYG000001587_15 | MGYG000001587_15_9 | 10398 | 11165 | + | YdjC |
| TC | MGYG000001587_15 | MGYG000001587_15_10 | 11320 | 12612 | + | 4.A.3.2.2 |
| TC | MGYG000001587_15 | MGYG000001587_15_11 | 12661 | 12957 | + | 4.A.3.2.6 |
| TC | MGYG000001587_15 | MGYG000001587_15_12 | 12960 | 13301 | + | 4.A.3.2.1 |
| CAZyme | MGYG000001587_15 | MGYG000001587_15_13 | 13387 | 14874 | + | GH1 |
Gene ID: MGYG000001587_15_7
Type: CAZyme
Location: 7879 - 9267 (+)
Type: CAZyme
Location: 7879 - 9267 (+)
Gene ID: MGYG000001587_15_8
Type: TF
Location: 9288 - 10109 (-)
Type: TF
Location: 9288 - 10109 (-)
Gene ID: MGYG000001587_15_9
Type: pfam
Location: 10398 - 11165 (+)
Type: pfam
Location: 10398 - 11165 (+)
Gene ID: MGYG000001587_15_10
Type: TC
Location: 11320 - 12612 (+)
Type: TC
Location: 11320 - 12612 (+)
Gene ID: MGYG000001587_15_11
Type: TC
Location: 12661 - 12957 (+)
Type: TC
Location: 12661 - 12957 (+)
Gene ID: MGYG000001587_15_12
Type: TC
Location: 12960 - 13301 (+)
Type: TC
Location: 12960 - 13301 (+)
Gene ID: MGYG000001587_15_13
Type: CAZyme
Location: 13387 - 14874 (+)
Type: CAZyme
Location: 13387 - 14874 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902470895
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.