Cluster: MGYG000001587_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 4
- Substrate:
- Genome ID: MGYG000001587
- CGC Family ID: CGCFAM_00002
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000001587_7 | MGYG000001587_7_19 | 25021 | 25686 | + | 9.B.18.1.2 |
| CAZyme | MGYG000001587_7 | MGYG000001587_7_20 | 25687 | 26520 | + | GT2 |
| CAZyme | MGYG000001587_7 | MGYG000001587_7_21 | 26523 | 27515 | + | GT2 |
| CAZyme | MGYG000001587_7 | MGYG000001587_7_22 | 27540 | 28556 | + | GT2 |
| pfam | MGYG000001587_7 | MGYG000001587_7_23 | 28553 | 29818 | + | EpsG |
| CAZyme | MGYG000001587_7 | MGYG000001587_7_24 | 29829 | 30881 | + | GT2 |
Gene ID: MGYG000001587_7_19
Type: TC
Location: 25021 - 25686 (+)
Type: TC
Location: 25021 - 25686 (+)
Gene ID: MGYG000001587_7_20
Type: CAZyme
Location: 25687 - 26520 (+)
Type: CAZyme
Location: 25687 - 26520 (+)
Gene ID: MGYG000001587_7_21
Type: CAZyme
Location: 26523 - 27515 (+)
Type: CAZyme
Location: 26523 - 27515 (+)
Gene ID: MGYG000001587_7_22
Type: CAZyme
Location: 27540 - 28556 (+)
Type: CAZyme
Location: 27540 - 28556 (+)
Gene ID: MGYG000001587_7_23
Type: pfam
Location: 28553 - 29818 (+)
Type: pfam
Location: 28553 - 29818 (+)
Gene ID: MGYG000001587_7_24
Type: CAZyme
Location: 29829 - 30881 (+)
Type: CAZyme
Location: 29829 - 30881 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902470895
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000001587_7_19 | vegan > omnivore | 1.03359 | 0.00701 |