Cluster: MGYG000001579_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000001579
- CGC Family ID: CGCFAM_03507
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000001579_1 | MGYG000001579_1_41 | 44007 | 45383 | - | 4.A.1.2.11 |
| pfam | MGYG000001579_1 | MGYG000001579_1_42 | 45387 | 46325 | - | AP_endonuc_2 |
| TC | MGYG000001579_1 | MGYG000001579_1_43 | 47007 | 49775 | + | 3.A.3.4.1 |
| TF | MGYG000001579_1 | MGYG000001579_1_44 | 49957 | 51501 | - | GerE |
| CAZyme | MGYG000001579_1 | MGYG000001579_1_45 | 51738 | 53168 | - | GH1 |
Gene ID: MGYG000001579_1_41
Type: TC
Location: 44007 - 45383 (-)
Type: TC
Location: 44007 - 45383 (-)
Gene ID: MGYG000001579_1_42
Type: pfam
Location: 45387 - 46325 (-)
Type: pfam
Location: 45387 - 46325 (-)
Gene ID: MGYG000001579_1_43
Type: TC
Location: 47007 - 49775 (+)
Type: TC
Location: 47007 - 49775 (+)
Gene ID: MGYG000001579_1_44
Type: TF
Location: 49957 - 51501 (-)
Type: TF
Location: 49957 - 51501 (-)
Gene ID: MGYG000001579_1_45
Type: CAZyme
Location: 51738 - 53168 (-)
Type: CAZyme
Location: 51738 - 53168 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902470765
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.