Cluster: MGYG000001575_CGC4
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 6
- Substrate:
- Genome ID: MGYG000001575
- CGC Family ID: CGCFAM_01504
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000001575_2 | MGYG000001575_2_31 | 34100 | 35560 | + | 2.A.7.18.3 |
| NULL(UNKNOWN) | MGYG000001575_2 | MGYG000001575_2_32 | 36269 | 36730 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | MGYG000001575_2 | MGYG000001575_2_33 | 36999 | 38090 | + | Abi_2 |
| CAZyme | MGYG000001575_2 | MGYG000001575_2_34 | 39090 | 40247 | - | GT2 |
| pfam | MGYG000001575_2 | MGYG000001575_2_35 | 40270 | 41700 | - | Polysacc_synt |
| pfam | MGYG000001575_2 | MGYG000001575_2_36 | 41690 | 42853 | - | Glycos_transf_1 | Glyco_trans_1_4 |
| CAZyme | MGYG000001575_2 | MGYG000001575_2_37 | 42853 | 43761 | - | GT101 |
| NULL(UNKNOWN) | MGYG000001575_2 | MGYG000001575_2_38 | 43748 | 44998 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000001575_2 | MGYG000001575_2_39 | 45033 | 45752 | - | GT32 |
| CAZyme | MGYG000001575_2 | MGYG000001575_2_40 | 46090 | 46860 | - | GT2 |
| pfam | MGYG000001575_2 | MGYG000001575_2_41 | 46863 | 47972 | - | Epimerase_2 |
| CAZyme | MGYG000001575_2 | MGYG000001575_2_42 | 47969 | 49072 | - | GT4 |
| CAZyme | MGYG000001575_2 | MGYG000001575_2_43 | 49146 | 49931 | - | GT26 |
| TC | MGYG000001575_2 | MGYG000001575_2_44 | 49932 | 50696 | - | 9.B.18.1.2 |
Gene ID: MGYG000001575_2_31
Type: TC
Location: 34100 - 35560 (+)
Type: TC
Location: 34100 - 35560 (+)
Gene ID: MGYG000001575_2_32
Type:
Location: 36269 - 36730 (-)
Type:
Location: 36269 - 36730 (-)
Gene ID: MGYG000001575_2_33
Type: pfam
Location: 36999 - 38090 (+)
Type: pfam
Location: 36999 - 38090 (+)
Gene ID: MGYG000001575_2_34
Type: CAZyme
Location: 39090 - 40247 (-)
Type: CAZyme
Location: 39090 - 40247 (-)
Gene ID: MGYG000001575_2_35
Type: pfam
Location: 40270 - 41700 (-)
Type: pfam
Location: 40270 - 41700 (-)
Gene ID: MGYG000001575_2_36
Type: pfam
Location: 41690 - 42853 (-)
Type: pfam
Location: 41690 - 42853 (-)
Gene ID: MGYG000001575_2_37
Type: CAZyme
Location: 42853 - 43761 (-)
Type: CAZyme
Location: 42853 - 43761 (-)
Gene ID: MGYG000001575_2_38
Type:
Location: 43748 - 44998 (-)
Type:
Location: 43748 - 44998 (-)
Gene ID: MGYG000001575_2_39
Type: CAZyme
Location: 45033 - 45752 (-)
Type: CAZyme
Location: 45033 - 45752 (-)
Gene ID: MGYG000001575_2_40
Type: CAZyme
Location: 46090 - 46860 (-)
Type: CAZyme
Location: 46090 - 46860 (-)
Gene ID: MGYG000001575_2_41
Type: pfam
Location: 46863 - 47972 (-)
Type: pfam
Location: 46863 - 47972 (-)
Gene ID: MGYG000001575_2_42
Type: CAZyme
Location: 47969 - 49072 (-)
Type: CAZyme
Location: 47969 - 49072 (-)
Gene ID: MGYG000001575_2_43
Type: CAZyme
Location: 49146 - 49931 (-)
Type: CAZyme
Location: 49146 - 49931 (-)
Gene ID: MGYG000001575_2_44
Type: TC
Location: 49932 - 50696 (-)
Type: TC
Location: 49932 - 50696 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902470815
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.