Cluster: MGYG000001575_CGC13
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000001575
- CGC Family ID: CGCFAM_03826
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000001575_11 | MGYG000001575_11_31 | 41367 | 43010 | - | 3.A.1.5.23 |
| TC | MGYG000001575_11 | MGYG000001575_11_32 | 43022 | 43888 | - | 3.A.1.5.27 |
| TC | MGYG000001575_11 | MGYG000001575_11_33 | 43875 | 44864 | - | 3.A.1.5.20 |
| TC | MGYG000001575_11 | MGYG000001575_11_34 | 44890 | 46626 | - | 3.A.1.5.3 |
| STP | MGYG000001575_11 | MGYG000001575_11_35 | 46791 | 48224 | - | HD |
| STP | MGYG000001575_11 | MGYG000001575_11_36 | 48390 | 49322 | - | PfkB |
| TC | MGYG000001575_11 | MGYG000001575_11_37 | 49478 | 51181 | - | 8.A.7.1.1 |
| STP | MGYG000001575_11 | MGYG000001575_11_38 | 51313 | 51576 | - | PTS-HPr |
| CAZyme | MGYG000001575_11 | MGYG000001575_11_39 | 51901 | 52926 | - | GT2 |
| pfam | MGYG000001575_11 | MGYG000001575_11_40 | 52937 | 54880 | - | RgpF |
| CAZyme | MGYG000001575_11 | MGYG000001575_11_41 | 55046 | 58609 | - | GT2 | GT2 | GT2 |
| TC | MGYG000001575_11 | MGYG000001575_11_42 | 59161 | 60378 | - | 3.A.1.103.4 |
Gene ID: MGYG000001575_11_31
Type: TC
Location: 41367 - 43010 (-)
Type: TC
Location: 41367 - 43010 (-)
Gene ID: MGYG000001575_11_32
Type: TC
Location: 43022 - 43888 (-)
Type: TC
Location: 43022 - 43888 (-)
Gene ID: MGYG000001575_11_33
Type: TC
Location: 43875 - 44864 (-)
Type: TC
Location: 43875 - 44864 (-)
Gene ID: MGYG000001575_11_34
Type: TC
Location: 44890 - 46626 (-)
Type: TC
Location: 44890 - 46626 (-)
Gene ID: MGYG000001575_11_35
Type: STP
Location: 46791 - 48224 (-)
Type: STP
Location: 46791 - 48224 (-)
Gene ID: MGYG000001575_11_36
Type: STP
Location: 48390 - 49322 (-)
Type: STP
Location: 48390 - 49322 (-)
Gene ID: MGYG000001575_11_37
Type: TC
Location: 49478 - 51181 (-)
Type: TC
Location: 49478 - 51181 (-)
Gene ID: MGYG000001575_11_38
Type: STP
Location: 51313 - 51576 (-)
Type: STP
Location: 51313 - 51576 (-)
Gene ID: MGYG000001575_11_39
Type: CAZyme
Location: 51901 - 52926 (-)
Type: CAZyme
Location: 51901 - 52926 (-)
Gene ID: MGYG000001575_11_40
Type: pfam
Location: 52937 - 54880 (-)
Type: pfam
Location: 52937 - 54880 (-)
Gene ID: MGYG000001575_11_41
Type: CAZyme
Location: 55046 - 58609 (-)
Type: CAZyme
Location: 55046 - 58609 (-)
Gene ID: MGYG000001575_11_42
Type: TC
Location: 59161 - 60378 (-)
Type: TC
Location: 59161 - 60378 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902470815
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.