Cluster: MGYG000001567_CGC9
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000001567
- CGC Family ID: CGCFAM_09247
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000001567_3 | MGYG000001567_3_81 | 103207 | 103935 | + | 3.A.1.147.6 |
| NULL(UNKNOWN) | MGYG000001567_3 | MGYG000001567_3_82 | 103936 | 105612 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | MGYG000001567_3 | MGYG000001567_3_83 | 106305 | 107510 | - | PAD_porph | PAD_porph |
| TC | MGYG000001567_3 | MGYG000001567_3_84 | 107694 | 109091 | - | 2.A.3.7.7 |
| pfam | MGYG000001567_3 | MGYG000001567_3_85 | 109219 | 110301 | - | OTCace | OTCace_N |
| TF | MGYG000001567_3 | MGYG000001567_3_86 | 110871 | 111836 | + | GerE |
| TC | MGYG000001567_3 | MGYG000001567_3_87 | 112939 | 115122 | - | 3.A.1.134.12 |
| TC | MGYG000001567_3 | MGYG000001567_3_88 | 115112 | 115957 | - | 3.A.1.134.12 |
| STP | MGYG000001567_3 | MGYG000001567_3_89 | 116310 | 117599 | + | NUDIX |
| NULL(UNKNOWN) | MGYG000001567_3 | MGYG000001567_3_90 | 117698 | 117952 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000001567_3 | MGYG000001567_3_91 | 118134 | 119660 | - | 2.A.33.1.1 |
| TC | MGYG000001567_3 | MGYG000001567_3_92 | 120090 | 120434 | - | 4.A.3.2.2 |
| TC | MGYG000001567_3 | MGYG000001567_3_93 | 120444 | 120749 | - | 4.A.3.2.8 |
| TC | MGYG000001567_3 | MGYG000001567_3_94 | 120871 | 122241 | - | 4.A.3.2.4 |
| CAZyme | MGYG000001567_3 | MGYG000001567_3_95 | 122332 | 123759 | - | GH1 |
Gene ID: MGYG000001567_3_81
Type: TC
Location: 103207 - 103935 (+)
Type: TC
Location: 103207 - 103935 (+)
Gene ID: MGYG000001567_3_82
Type:
Location: 103936 - 105612 (+)
Type:
Location: 103936 - 105612 (+)
Gene ID: MGYG000001567_3_83
Type: pfam
Location: 106305 - 107510 (-)
Type: pfam
Location: 106305 - 107510 (-)
Gene ID: MGYG000001567_3_84
Type: TC
Location: 107694 - 109091 (-)
Type: TC
Location: 107694 - 109091 (-)
Gene ID: MGYG000001567_3_85
Type: pfam
Location: 109219 - 110301 (-)
Type: pfam
Location: 109219 - 110301 (-)
Gene ID: MGYG000001567_3_86
Type: TF
Location: 110871 - 111836 (+)
Type: TF
Location: 110871 - 111836 (+)
Gene ID: MGYG000001567_3_87
Type: TC
Location: 112939 - 115122 (-)
Type: TC
Location: 112939 - 115122 (-)
Gene ID: MGYG000001567_3_88
Type: TC
Location: 115112 - 115957 (-)
Type: TC
Location: 115112 - 115957 (-)
Gene ID: MGYG000001567_3_89
Type: STP
Location: 116310 - 117599 (+)
Type: STP
Location: 116310 - 117599 (+)
Gene ID: MGYG000001567_3_90
Type:
Location: 117698 - 117952 (+)
Type:
Location: 117698 - 117952 (+)
Gene ID: MGYG000001567_3_91
Type: TC
Location: 118134 - 119660 (-)
Type: TC
Location: 118134 - 119660 (-)
Gene ID: MGYG000001567_3_92
Type: TC
Location: 120090 - 120434 (-)
Type: TC
Location: 120090 - 120434 (-)
Gene ID: MGYG000001567_3_93
Type: TC
Location: 120444 - 120749 (-)
Type: TC
Location: 120444 - 120749 (-)
Gene ID: MGYG000001567_3_94
Type: TC
Location: 120871 - 122241 (-)
Type: TC
Location: 120871 - 122241 (-)
Gene ID: MGYG000001567_3_95
Type: CAZyme
Location: 122332 - 123759 (-)
Type: CAZyme
Location: 122332 - 123759 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902470695
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000001567_3_83 | vegan > omnivore | 1.19547 | 0.00455 |
| MGYG000001567_3_84 | vegan > omnivore | 2.92384 | 0.00455 |
| MGYG000001567_3_94 | vegan > omnivore | 1.23280 | 0.00455 |