Cluster: MGYG000001567_CGC8
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000001567
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000001567_3 | MGYG000001567_3_35 | 43363 | 45018 | - | 3.A.1.31.1 |
| pfam | MGYG000001567_3 | MGYG000001567_3_36 | 45015 | 45797 | - | CbiQ |
| TF | MGYG000001567_3 | MGYG000001567_3_37 | 45875 | 46945 | + | HTH_AraC |
| CAZyme | MGYG000001567_3 | MGYG000001567_3_38 | 47284 | 48339 | - | GH170 |
| TC | MGYG000001567_3 | MGYG000001567_3_39 | 48736 | 50172 | - | 4.A.1.2.7 |
Gene ID: MGYG000001567_3_35
Type: TC
Location: 43363 - 45018 (-)
Type: TC
Location: 43363 - 45018 (-)
Gene ID: MGYG000001567_3_36
Type: pfam
Location: 45015 - 45797 (-)
Type: pfam
Location: 45015 - 45797 (-)
Gene ID: MGYG000001567_3_37
Type: TF
Location: 45875 - 46945 (+)
Type: TF
Location: 45875 - 46945 (+)
Gene ID: MGYG000001567_3_38
Type: CAZyme
Location: 47284 - 48339 (-)
Type: CAZyme
Location: 47284 - 48339 (-)
Gene ID: MGYG000001567_3_39
Type: TC
Location: 48736 - 50172 (-)
Type: TC
Location: 48736 - 50172 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902470695
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000001567_3_39 | vegan > omnivore | 1.54873 | 0.00455 |