Cluster: MGYG000001567_CGC21
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 7
- Substrate:
- Genome ID: MGYG000001567
- CGC Family ID: CGCFAM_00672
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000001567_15 | MGYG000001567_15_3 | 3805 | 5427 | + | GT4 |
| CAZyme | MGYG000001567_15 | MGYG000001567_15_4 | 5514 | 7358 | - | GH25 |
| CAZyme | MGYG000001567_15 | MGYG000001567_15_5 | 7659 | 10097 | + | GT2 | GT2 |
| pfam | MGYG000001567_15 | MGYG000001567_15_6 | 10438 | 12510 | - | DUF2142 |
| CAZyme | MGYG000001567_15 | MGYG000001567_15_7 | 12648 | 13766 | - | GT4 |
| CAZyme | MGYG000001567_15 | MGYG000001567_15_8 | 13904 | 14590 | + | GT2 |
| pfam | MGYG000001567_15 | MGYG000001567_15_9 | 14593 | 14958 | + | DUF2304 |
| CAZyme | MGYG000001567_15 | MGYG000001567_15_10 | 14955 | 16109 | + | GT4 |
| pfam | MGYG000001567_15 | MGYG000001567_15_11 | 16196 | 17239 | + | Acyl_transf_3 |
| NULL(UNKNOWN) | MGYG000001567_15 | MGYG000001567_15_12 | 17247 | 18506 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000001567_15 | MGYG000001567_15_13 | 18497 | 19624 | - | GT4 |
| pfam | MGYG000001567_15 | MGYG000001567_15_14 | 19692 | 20537 | - | LicD |
| pfam | MGYG000001567_15 | MGYG000001567_15_15 | 20629 | 21951 | - | AAA_14 | DUF4143 |
| TC | MGYG000001567_15 | MGYG000001567_15_16 | 22091 | 23032 | - | 2.A.7.18.1 |
Gene ID: MGYG000001567_15_3
Type: CAZyme
Location: 3805 - 5427 (+)
Type: CAZyme
Location: 3805 - 5427 (+)
Gene ID: MGYG000001567_15_4
Type: CAZyme
Location: 5514 - 7358 (-)
Type: CAZyme
Location: 5514 - 7358 (-)
Gene ID: MGYG000001567_15_5
Type: CAZyme
Location: 7659 - 10097 (+)
Type: CAZyme
Location: 7659 - 10097 (+)
Gene ID: MGYG000001567_15_6
Type: pfam
Location: 10438 - 12510 (-)
Type: pfam
Location: 10438 - 12510 (-)
Gene ID: MGYG000001567_15_7
Type: CAZyme
Location: 12648 - 13766 (-)
Type: CAZyme
Location: 12648 - 13766 (-)
Gene ID: MGYG000001567_15_8
Type: CAZyme
Location: 13904 - 14590 (+)
Type: CAZyme
Location: 13904 - 14590 (+)
Gene ID: MGYG000001567_15_9
Type: pfam
Location: 14593 - 14958 (+)
Type: pfam
Location: 14593 - 14958 (+)
Gene ID: MGYG000001567_15_10
Type: CAZyme
Location: 14955 - 16109 (+)
Type: CAZyme
Location: 14955 - 16109 (+)
Gene ID: MGYG000001567_15_11
Type: pfam
Location: 16196 - 17239 (+)
Type: pfam
Location: 16196 - 17239 (+)
Gene ID: MGYG000001567_15_12
Type:
Location: 17247 - 18506 (+)
Type:
Location: 17247 - 18506 (+)
Gene ID: MGYG000001567_15_13
Type: CAZyme
Location: 18497 - 19624 (-)
Type: CAZyme
Location: 18497 - 19624 (-)
Gene ID: MGYG000001567_15_14
Type: pfam
Location: 19692 - 20537 (-)
Type: pfam
Location: 19692 - 20537 (-)
Gene ID: MGYG000001567_15_15
Type: pfam
Location: 20629 - 21951 (-)
Type: pfam
Location: 20629 - 21951 (-)
Gene ID: MGYG000001567_15_16
Type: TC
Location: 22091 - 23032 (-)
Type: TC
Location: 22091 - 23032 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902470695
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.