Cluster: MGYG000001567_CGC18
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000001567
- CGC Family ID: CGCFAM_00464
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000001567_11 | MGYG000001567_11_48 | 57206 | 58780 | + | GH28 |
| TC | MGYG000001567_11 | MGYG000001567_11_49 | 59082 | 60626 | + | 2.A.2.5.1 |
| peptidase | MGYG000001567_11 | MGYG000001567_11_50 | 60886 | 61731 | + | S09.UPW |
| CAZyme | MGYG000001567_11 | MGYG000001567_11_51 | 61728 | 64127 | + | CE19 | CE8 |
| pfam | MGYG000001567_11 | MGYG000001567_11_52 | 64137 | 64802 | + | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | MGYG000001567_11 | MGYG000001567_11_53 | 64921 | 66165 | + | GH105 |
Gene ID: MGYG000001567_11_48
Type: CAZyme
Location: 57206 - 58780 (+)
Type: CAZyme
Location: 57206 - 58780 (+)
Gene ID: MGYG000001567_11_49
Type: TC
Location: 59082 - 60626 (+)
Type: TC
Location: 59082 - 60626 (+)
Gene ID: MGYG000001567_11_50
Type: peptidase
Location: 60886 - 61731 (+)
Type: peptidase
Location: 60886 - 61731 (+)
Gene ID: MGYG000001567_11_51
Type: CAZyme
Location: 61728 - 64127 (+)
Type: CAZyme
Location: 61728 - 64127 (+)
Gene ID: MGYG000001567_11_52
Type: pfam
Location: 64137 - 64802 (+)
Type: pfam
Location: 64137 - 64802 (+)
Gene ID: MGYG000001567_11_53
Type: CAZyme
Location: 64921 - 66165 (+)
Type: CAZyme
Location: 64921 - 66165 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902470695
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.