Cluster: MGYG000001567_CGC13
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: MGYG000001567
- CGC Family ID: CGCFAM_01159
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000001567_6 | MGYG000001567_6_54 | 79279 | 80505 | - | GH28 |
| pfam | MGYG000001567_6 | MGYG000001567_6_55 | 80517 | 81446 | - | IU_nuc_hydro |
| NULL(UNKNOWN) | MGYG000001567_6 | MGYG000001567_6_56 | 81439 | 82266 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000001567_6 | MGYG000001567_6_57 | 82248 | 83924 | - | CBM91 | GH43_11 |
| pfam | MGYG000001567_6 | MGYG000001567_6_58 | 83941 | 84804 | - | Hydrolase_3 |
| CAZyme | MGYG000001567_6 | MGYG000001567_6_59 | 84798 | 85949 | - | GH88 |
| NULL(UNKNOWN) | MGYG000001567_6 | MGYG000001567_6_60 | 85930 | 86589 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000001567_6 | MGYG000001567_6_61 | 86651 | 87529 | - | 4.A.6.1.19 |
| TC | MGYG000001567_6 | MGYG000001567_6_62 | 87522 | 88388 | - | 4.A.6.1.22 |
| TC | MGYG000001567_6 | MGYG000001567_6_63 | 88441 | 88923 | - | 4.A.6.1.1 |
| pfam | MGYG000001567_6 | MGYG000001567_6_64 | 88993 | 89424 | - | EIIA-man |
| CAZyme | MGYG000001567_6 | MGYG000001567_6_65 | 89563 | 91431 | - | GH154 |
Gene ID: MGYG000001567_6_54
Type: CAZyme
Location: 79279 - 80505 (-)
Type: CAZyme
Location: 79279 - 80505 (-)
Gene ID: MGYG000001567_6_55
Type: pfam
Location: 80517 - 81446 (-)
Type: pfam
Location: 80517 - 81446 (-)
Gene ID: MGYG000001567_6_56
Type:
Location: 81439 - 82266 (-)
Type:
Location: 81439 - 82266 (-)
Gene ID: MGYG000001567_6_57
Type: CAZyme
Location: 82248 - 83924 (-)
Type: CAZyme
Location: 82248 - 83924 (-)
Gene ID: MGYG000001567_6_58
Type: pfam
Location: 83941 - 84804 (-)
Type: pfam
Location: 83941 - 84804 (-)
Gene ID: MGYG000001567_6_59
Type: CAZyme
Location: 84798 - 85949 (-)
Type: CAZyme
Location: 84798 - 85949 (-)
Gene ID: MGYG000001567_6_60
Type:
Location: 85930 - 86589 (-)
Type:
Location: 85930 - 86589 (-)
Gene ID: MGYG000001567_6_61
Type: TC
Location: 86651 - 87529 (-)
Type: TC
Location: 86651 - 87529 (-)
Gene ID: MGYG000001567_6_62
Type: TC
Location: 87522 - 88388 (-)
Type: TC
Location: 87522 - 88388 (-)
Gene ID: MGYG000001567_6_63
Type: TC
Location: 88441 - 88923 (-)
Type: TC
Location: 88441 - 88923 (-)
Gene ID: MGYG000001567_6_64
Type: pfam
Location: 88993 - 89424 (-)
Type: pfam
Location: 88993 - 89424 (-)
Gene ID: MGYG000001567_6_65
Type: CAZyme
Location: 89563 - 91431 (-)
Type: CAZyme
Location: 89563 - 91431 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902470695
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.