Cluster: MGYG000001289_CGC3
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 7
- Substrate:
- Genome ID: MGYG000001289
- CGC Family ID: CGCFAM_00003
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000001289_2 | MGYG000001289_2_24 | 22063 | 23097 | - | GT2 |
| TC | MGYG000001289_2 | MGYG000001289_2_25 | 23117 | 24322 | - | 3.A.1.103.5 |
| pfam | MGYG000001289_2 | MGYG000001289_2_26 | 24322 | 25131 | - | ABC2_membrane |
| CAZyme | MGYG000001289_2 | MGYG000001289_2_27 | 25115 | 26071 | - | GT2 |
| CAZyme | MGYG000001289_2 | MGYG000001289_2_28 | 26068 | 27216 | - | GT4 |
| pfam | MGYG000001289_2 | MGYG000001289_2_29 | 27336 | 28871 | - | DUF2142 |
| CAZyme | MGYG000001289_2 | MGYG000001289_2_30 | 28879 | 29889 | - | GT2 |
| NULL(UNKNOWN) | MGYG000001289_2 | MGYG000001289_2_31 | 29892 | 31163 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | MGYG000001289_2 | MGYG000001289_2_32 | 31156 | 31488 | - | DUF2304 |
| CAZyme | MGYG000001289_2 | MGYG000001289_2_33 | 31494 | 32183 | - | GT2 |
| pfam | MGYG000001289_2 | MGYG000001289_2_34 | 32265 | 33116 | - | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd |
| CAZyme | MGYG000001289_2 | MGYG000001289_2_35 | 33182 | 34108 | - | GT2 |
| pfam | MGYG000001289_2 | MGYG000001289_2_36 | 34283 | 35383 | - | adh_short | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | KR | GDP_Man_Dehyd |
| pfam | MGYG000001289_2 | MGYG000001289_2_37 | 35442 | 36422 | + | GFO_IDH_MocA |
| TC | MGYG000001289_2 | MGYG000001289_2_38 | 36419 | 37504 | + | 1.I.1.1.3 |
| CAZyme | MGYG000001289_2 | MGYG000001289_2_39 | 37541 | 38923 | - | CE4 |
Gene ID: MGYG000001289_2_24
Type: CAZyme
Location: 22063 - 23097 (-)
Type: CAZyme
Location: 22063 - 23097 (-)
Gene ID: MGYG000001289_2_25
Type: TC
Location: 23117 - 24322 (-)
Type: TC
Location: 23117 - 24322 (-)
Gene ID: MGYG000001289_2_26
Type: pfam
Location: 24322 - 25131 (-)
Type: pfam
Location: 24322 - 25131 (-)
Gene ID: MGYG000001289_2_27
Type: CAZyme
Location: 25115 - 26071 (-)
Type: CAZyme
Location: 25115 - 26071 (-)
Gene ID: MGYG000001289_2_28
Type: CAZyme
Location: 26068 - 27216 (-)
Type: CAZyme
Location: 26068 - 27216 (-)
Gene ID: MGYG000001289_2_29
Type: pfam
Location: 27336 - 28871 (-)
Type: pfam
Location: 27336 - 28871 (-)
Gene ID: MGYG000001289_2_30
Type: CAZyme
Location: 28879 - 29889 (-)
Type: CAZyme
Location: 28879 - 29889 (-)
Gene ID: MGYG000001289_2_31
Type:
Location: 29892 - 31163 (-)
Type:
Location: 29892 - 31163 (-)
Gene ID: MGYG000001289_2_32
Type: pfam
Location: 31156 - 31488 (-)
Type: pfam
Location: 31156 - 31488 (-)
Gene ID: MGYG000001289_2_33
Type: CAZyme
Location: 31494 - 32183 (-)
Type: CAZyme
Location: 31494 - 32183 (-)
Gene ID: MGYG000001289_2_34
Type: pfam
Location: 32265 - 33116 (-)
Type: pfam
Location: 32265 - 33116 (-)
Gene ID: MGYG000001289_2_35
Type: CAZyme
Location: 33182 - 34108 (-)
Type: CAZyme
Location: 33182 - 34108 (-)
Gene ID: MGYG000001289_2_36
Type: pfam
Location: 34283 - 35383 (-)
Type: pfam
Location: 34283 - 35383 (-)
Gene ID: MGYG000001289_2_37
Type: pfam
Location: 35442 - 36422 (+)
Type: pfam
Location: 35442 - 36422 (+)
Gene ID: MGYG000001289_2_38
Type: TC
Location: 36419 - 37504 (+)
Type: TC
Location: 36419 - 37504 (+)
Gene ID: MGYG000001289_2_39
Type: CAZyme
Location: 37541 - 38923 (-)
Type: CAZyme
Location: 37541 - 38923 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus lactarius
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.