Cluster: MGYG000001287_CGC9
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000001287
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000001287_12 | MGYG000001287_12_23 | 29157 | 31193 | - | 2.A.36.3.2 |
| TF | MGYG000001287_12 | MGYG000001287_12_24 | 31450 | 33003 | + | HTH_3 |
| TF | MGYG000001287_12 | MGYG000001287_12_25 | 33120 | 34178 | - | LacI |
| CAZyme | MGYG000001287_12 | MGYG000001287_12_26 | 34208 | 35587 | - | GH13_20 |
| TC | MGYG000001287_12 | MGYG000001287_12_27 | 35620 | 36441 | - | 3.A.1.1.36 |
| TC | MGYG000001287_12 | MGYG000001287_12_28 | 36441 | 37346 | - | 3.A.1.1.36 |
| TC | MGYG000001287_12 | MGYG000001287_12_29 | 37431 | 38702 | - | 3.A.1.1.44 |
| CAZyme | MGYG000001287_12 | MGYG000001287_12_30 | 38910 | 40772 | - | GH13_1 |
| pfam | MGYG000001287_12 | MGYG000001287_12_31 | 41076 | 42338 | + | MFS_1 |
| NULL(UNKNOWN) | MGYG000001287_12 | MGYG000001287_12_32 | 42383 | 42907 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000001287_12 | MGYG000001287_12_33 | 42935 | 44146 | - | 3.A.1.122.2 |
| TC | MGYG000001287_12 | MGYG000001287_12_34 | 44130 | 44840 | - | 3.A.1.122.3 |
Gene ID: MGYG000001287_12_23
Type: TC
Location: 29157 - 31193 (-)
Type: TC
Location: 29157 - 31193 (-)
Gene ID: MGYG000001287_12_24
Type: TF
Location: 31450 - 33003 (+)
Type: TF
Location: 31450 - 33003 (+)
Gene ID: MGYG000001287_12_25
Type: TF
Location: 33120 - 34178 (-)
Type: TF
Location: 33120 - 34178 (-)
Gene ID: MGYG000001287_12_26
Type: CAZyme
Location: 34208 - 35587 (-)
Type: CAZyme
Location: 34208 - 35587 (-)
Gene ID: MGYG000001287_12_27
Type: TC
Location: 35620 - 36441 (-)
Type: TC
Location: 35620 - 36441 (-)
Gene ID: MGYG000001287_12_28
Type: TC
Location: 36441 - 37346 (-)
Type: TC
Location: 36441 - 37346 (-)
Gene ID: MGYG000001287_12_29
Type: TC
Location: 37431 - 38702 (-)
Type: TC
Location: 37431 - 38702 (-)
Gene ID: MGYG000001287_12_30
Type: CAZyme
Location: 38910 - 40772 (-)
Type: CAZyme
Location: 38910 - 40772 (-)
Gene ID: MGYG000001287_12_31
Type: pfam
Location: 41076 - 42338 (+)
Type: pfam
Location: 41076 - 42338 (+)
Gene ID: MGYG000001287_12_32
Type:
Location: 42383 - 42907 (-)
Type:
Location: 42383 - 42907 (-)
Gene ID: MGYG000001287_12_33
Type: TC
Location: 42935 - 44146 (-)
Type: TC
Location: 42935 - 44146 (-)
Gene ID: MGYG000001287_12_34
Type: TC
Location: 44130 - 44840 (-)
Type: TC
Location: 44130 - 44840 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium swidsinskii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.