Cluster: MGYG000001227_CGC6
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 7
- Substrate:
- Genome ID: MGYG000001227
- CGC Family ID: CGCFAM_00011
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000001227_16 | MGYG000001227_16_15 | 19434 | 20276 | - | 3.A.1.103.1 |
| CAZyme | MGYG000001227_16 | MGYG000001227_16_16 | 20417 | 21379 | + | GT81 |
| CAZyme | MGYG000001227_16 | MGYG000001227_16_17 | 21386 | 22471 | + | GT2 |
| TC | MGYG000001227_16 | MGYG000001227_16_18 | 22572 | 24434 | + | 9.B.144.1.5 |
| NULL(UNKNOWN) | MGYG000001227_16 | MGYG000001227_16_19 | 24775 | 24933 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000001227_16 | MGYG000001227_16_20 | 25050 | 26285 | - | GT4 |
| CAZyme | MGYG000001227_16 | MGYG000001227_16_21 | 26307 | 27368 | - | GT2 |
| CAZyme | MGYG000001227_16 | MGYG000001227_16_22 | 27408 | 28664 | - | GT2 |
| TC | MGYG000001227_16 | MGYG000001227_16_23 | 28666 | 29421 | - | 3.A.1.103.1 |
| TC | MGYG000001227_16 | MGYG000001227_16_24 | 29431 | 30243 | - | 3.A.1.103.4 |
| CAZyme | MGYG000001227_16 | MGYG000001227_16_25 | 30452 | 31588 | - | GT2 |
| CAZyme | MGYG000001227_16 | MGYG000001227_16_26 | 31804 | 33807 | + | GT2 |
Gene ID: MGYG000001227_16_15
Type: TC
Location: 19434 - 20276 (-)
Type: TC
Location: 19434 - 20276 (-)
Gene ID: MGYG000001227_16_16
Type: CAZyme
Location: 20417 - 21379 (+)
Type: CAZyme
Location: 20417 - 21379 (+)
Gene ID: MGYG000001227_16_17
Type: CAZyme
Location: 21386 - 22471 (+)
Type: CAZyme
Location: 21386 - 22471 (+)
Gene ID: MGYG000001227_16_18
Type: TC
Location: 22572 - 24434 (+)
Type: TC
Location: 22572 - 24434 (+)
Gene ID: MGYG000001227_16_19
Type:
Location: 24775 - 24933 (+)
Type:
Location: 24775 - 24933 (+)
Gene ID: MGYG000001227_16_20
Type: CAZyme
Location: 25050 - 26285 (-)
Type: CAZyme
Location: 25050 - 26285 (-)
Gene ID: MGYG000001227_16_21
Type: CAZyme
Location: 26307 - 27368 (-)
Type: CAZyme
Location: 26307 - 27368 (-)
Gene ID: MGYG000001227_16_22
Type: CAZyme
Location: 27408 - 28664 (-)
Type: CAZyme
Location: 27408 - 28664 (-)
Gene ID: MGYG000001227_16_23
Type: TC
Location: 28666 - 29421 (-)
Type: TC
Location: 28666 - 29421 (-)
Gene ID: MGYG000001227_16_24
Type: TC
Location: 29431 - 30243 (-)
Type: TC
Location: 29431 - 30243 (-)
Gene ID: MGYG000001227_16_25
Type: CAZyme
Location: 30452 - 31588 (-)
Type: CAZyme
Location: 30452 - 31588 (-)
Gene ID: MGYG000001227_16_26
Type: CAZyme
Location: 31804 - 33807 (+)
Type: CAZyme
Location: 31804 - 33807 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902470345
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000001227_16_17 | vegan > omnivore | 1.04220 | 0.02695 |
| MGYG000001227_16_20 | vegetarian > vegan | 3.21763 | 0.02581 |
| MGYG000001227_16_21 | vegetarian > vegan | 5.34021 | 0.02581 |
| MGYG000001227_16_24 | vegetarian > vegan | 2.50421 | 0.02581 |
| MGYG000001227_16_25 | vegetarian > vegan | 2.46086 | 0.02581 |