Cluster: MGYG000001227_CGC13
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000001227
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000001227_33 | MGYG000001227_33_10 | 9072 | 9545 | + | 4.A.6.1.18 |
| TC | MGYG000001227_33 | MGYG000001227_33_11 | 9555 | 10340 | + | 4.A.6.1.13 |
| TC | MGYG000001227_33 | MGYG000001227_33_12 | 10343 | 11176 | + | 4.A.6.1.13 |
| pfam | MGYG000001227_33 | MGYG000001227_33_13 | 11203 | 11601 | + | EIIA-man |
| CAZyme | MGYG000001227_33 | MGYG000001227_33_14 | 11614 | 12738 | + | GH172 |
Gene ID: MGYG000001227_33_10
Type: TC
Location: 9072 - 9545 (+)
Type: TC
Location: 9072 - 9545 (+)
Gene ID: MGYG000001227_33_11
Type: TC
Location: 9555 - 10340 (+)
Type: TC
Location: 9555 - 10340 (+)
Gene ID: MGYG000001227_33_12
Type: TC
Location: 10343 - 11176 (+)
Type: TC
Location: 10343 - 11176 (+)
Gene ID: MGYG000001227_33_13
Type: pfam
Location: 11203 - 11601 (+)
Type: pfam
Location: 11203 - 11601 (+)
Gene ID: MGYG000001227_33_14
Type: CAZyme
Location: 11614 - 12738 (+)
Type: CAZyme
Location: 11614 - 12738 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902470345
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000001227_33_10 | vegan > omnivore | 1.15647 | 0.02695 |
| MGYG000001227_33_14 | vegan > omnivore | 1.08133 | 0.02695 |