Cluster: MGYG000001215_CGC13
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000001215
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000001215_31 | MGYG000001215_31_10 | 8161 | 9603 | + | 3.A.1.8.1 |
| TC | MGYG000001215_31 | MGYG000001215_31_11 | 9607 | 10677 | + | 3.A.1.1.3 |
| pfam | MGYG000001215_31 | MGYG000001215_31_12 | 11107 | 12390 | + | HGD-D |
| TC | MGYG000001215_31 | MGYG000001215_31_13 | 12576 | 14186 | + | 3.A.1.5.11 |
| TC | MGYG000001215_31 | MGYG000001215_31_14 | 14275 | 15228 | + | 3.A.1.5.39 |
| TC | MGYG000001215_31 | MGYG000001215_31_15 | 15225 | 16055 | + | 3.A.1.5.39 |
| TC | MGYG000001215_31 | MGYG000001215_31_16 | 16059 | 17054 | + | 3.A.1.5.37 |
| TC | MGYG000001215_31 | MGYG000001215_31_17 | 17044 | 17829 | + | 3.A.1.5.36 |
| pfam | MGYG000001215_31 | MGYG000001215_31_18 | 17906 | 19069 | + | HGD-D |
| pfam | MGYG000001215_31 | MGYG000001215_31_19 | 19224 | 19988 | + | BcrAD_BadFG |
| CAZyme | MGYG000001215_31 | MGYG000001215_31_20 | 20003 | 21220 | + | GT4 |
Gene ID: MGYG000001215_31_10
Type: TC
Location: 8161 - 9603 (+)
Type: TC
Location: 8161 - 9603 (+)
Gene ID: MGYG000001215_31_11
Type: TC
Location: 9607 - 10677 (+)
Type: TC
Location: 9607 - 10677 (+)
Gene ID: MGYG000001215_31_12
Type: pfam
Location: 11107 - 12390 (+)
Type: pfam
Location: 11107 - 12390 (+)
Gene ID: MGYG000001215_31_13
Type: TC
Location: 12576 - 14186 (+)
Type: TC
Location: 12576 - 14186 (+)
Gene ID: MGYG000001215_31_14
Type: TC
Location: 14275 - 15228 (+)
Type: TC
Location: 14275 - 15228 (+)
Gene ID: MGYG000001215_31_15
Type: TC
Location: 15225 - 16055 (+)
Type: TC
Location: 15225 - 16055 (+)
Gene ID: MGYG000001215_31_16
Type: TC
Location: 16059 - 17054 (+)
Type: TC
Location: 16059 - 17054 (+)
Gene ID: MGYG000001215_31_17
Type: TC
Location: 17044 - 17829 (+)
Type: TC
Location: 17044 - 17829 (+)
Gene ID: MGYG000001215_31_18
Type: pfam
Location: 17906 - 19069 (+)
Type: pfam
Location: 17906 - 19069 (+)
Gene ID: MGYG000001215_31_19
Type: pfam
Location: 19224 - 19988 (+)
Type: pfam
Location: 19224 - 19988 (+)
Gene ID: MGYG000001215_31_20
Type: CAZyme
Location: 20003 - 21220 (+)
Type: CAZyme
Location: 20003 - 21220 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900759045
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000001215_31_13 | vegan > omnivore | 3.22694 | 0.01332 |
| MGYG000001215_31_14 | vegan > omnivore | 2.69184 | 0.01332 |
| MGYG000001215_31_15 | vegan > omnivore | 3.01391 | 0.01332 |
| MGYG000001215_31_16 | vegan > omnivore | 1.33218 | 0.01332 |
| MGYG000001215_31_17 | vegan > omnivore | 2.85233 | 0.01332 |
| MGYG000001215_31_20 | vegan > omnivore | 1.50333 | 0.01332 |