Cluster: MGYG000001200_CGC8
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000001200
- CGC Family ID: CGCFAM_00182
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000001200_17 | MGYG000001200_17_19 | 18495 | 19712 | - | GT4 |
| pfam | MGYG000001200_17 | MGYG000001200_17_20 | 19727 | 20491 | - | BcrAD_BadFG |
| pfam | MGYG000001200_17 | MGYG000001200_17_21 | 20542 | 21705 | - | HGD-D |
| TC | MGYG000001200_17 | MGYG000001200_17_22 | 21782 | 22036 | - | 3.A.1.5.22 |
| TC | MGYG000001200_17 | MGYG000001200_17_23 | 22124 | 22567 | - | 3.A.1.5.36 |
| TC | MGYG000001200_17 | MGYG000001200_17_24 | 22557 | 23552 | - | 3.A.1.5.37 |
| TC | MGYG000001200_17 | MGYG000001200_17_25 | 23556 | 24386 | - | 3.A.1.5.39 |
| TC | MGYG000001200_17 | MGYG000001200_17_26 | 24383 | 25303 | - | 3.A.1.5.11 |
| TC | MGYG000001200_17 | MGYG000001200_17_27 | 25425 | 27035 | - | 3.A.1.5.11 |
| pfam | MGYG000001200_17 | MGYG000001200_17_28 | 27220 | 28503 | - | HGD-D |
| TC | MGYG000001200_17 | MGYG000001200_17_29 | 28935 | 30005 | - | 3.A.1.1.3 |
| TC | MGYG000001200_17 | MGYG000001200_17_30 | 30009 | 31451 | - | 3.A.1.8.1 |
Gene ID: MGYG000001200_17_19
Type: CAZyme
Location: 18495 - 19712 (-)
Type: CAZyme
Location: 18495 - 19712 (-)
Gene ID: MGYG000001200_17_20
Type: pfam
Location: 19727 - 20491 (-)
Type: pfam
Location: 19727 - 20491 (-)
Gene ID: MGYG000001200_17_21
Type: pfam
Location: 20542 - 21705 (-)
Type: pfam
Location: 20542 - 21705 (-)
Gene ID: MGYG000001200_17_22
Type: TC
Location: 21782 - 22036 (-)
Type: TC
Location: 21782 - 22036 (-)
Gene ID: MGYG000001200_17_23
Type: TC
Location: 22124 - 22567 (-)
Type: TC
Location: 22124 - 22567 (-)
Gene ID: MGYG000001200_17_24
Type: TC
Location: 22557 - 23552 (-)
Type: TC
Location: 22557 - 23552 (-)
Gene ID: MGYG000001200_17_25
Type: TC
Location: 23556 - 24386 (-)
Type: TC
Location: 23556 - 24386 (-)
Gene ID: MGYG000001200_17_26
Type: TC
Location: 24383 - 25303 (-)
Type: TC
Location: 24383 - 25303 (-)
Gene ID: MGYG000001200_17_27
Type: TC
Location: 25425 - 27035 (-)
Type: TC
Location: 25425 - 27035 (-)
Gene ID: MGYG000001200_17_28
Type: pfam
Location: 27220 - 28503 (-)
Type: pfam
Location: 27220 - 28503 (-)
Gene ID: MGYG000001200_17_29
Type: TC
Location: 28935 - 30005 (-)
Type: TC
Location: 28935 - 30005 (-)
Gene ID: MGYG000001200_17_30
Type: TC
Location: 30009 - 31451 (-)
Type: TC
Location: 30009 - 31451 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902470095
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000001200_17_19 | vegan > omnivore | 1.69567 | 0.01057 |
| MGYG000001200_17_22 | vegan > omnivore | 3.56633 | 0.01057 |
| MGYG000001200_17_22 | vegetarian > omnivore | 2.31022 | 0.03311 |
| MGYG000001200_17_23 | vegan > omnivore | 2.54601 | 0.01057 |
| MGYG000001200_17_25 | vegan > omnivore | 3.05516 | 0.01057 |
| MGYG000001200_17_25 | vegetarian > omnivore | 1.29814 | 0.03311 |
| MGYG000001200_17_26 | vegan > omnivore | 2.84946 | 0.01057 |
| MGYG000001200_17_26 | vegetarian > omnivore | 1.26975 | 0.03311 |
| MGYG000001200_17_27 | vegan > omnivore | 3.37453 | 0.01057 |
| MGYG000001200_17_27 | vegetarian > omnivore | 1.10455 | 0.03311 |