Cluster: MGYG000001186_CGC40
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 2
- Substrate: galactan
- Genome ID: MGYG000001186
- CGC Family ID: CGCFAM_00938
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000001186_18 | MGYG000001186_18_9 | 8939 | 11644 | - | 8.A.59.4.1 |
| pfam | MGYG000001186_18 | MGYG000001186_18_10 | 11694 | 12161 | - | Sm_multidrug_ex |
| STP | MGYG000001186_18 | MGYG000001186_18_11 | 12158 | 13216 | - | Aminotran_1_2 |
| TC | MGYG000001186_18 | MGYG000001186_18_12 | 13576 | 14925 | + | 2.A.66.1.33 |
| pfam | MGYG000001186_18 | MGYG000001186_18_13 | 15004 | 16539 | - | GalP_UDP_transf | GalP_UDP_tr_C |
| pfam | MGYG000001186_18 | MGYG000001186_18_14 | 16626 | 17795 | - | GHMP_kinases_N | GHMP_kinases_C | GalKase_gal_bdg |
| CAZyme | MGYG000001186_18 | MGYG000001186_18_15 | 18005 | 19114 | - | GH53 |
| CAZyme | MGYG000001186_18 | MGYG000001186_18_16 | 19178 | 22258 | - | GH2 |
| TC | MGYG000001186_18 | MGYG000001186_18_17 | 22465 | 23295 | - | 3.A.1.1.4 |
| TC | MGYG000001186_18 | MGYG000001186_18_18 | 23288 | 24190 | - | 3.A.1.1.4 |
Gene ID: MGYG000001186_18_9
Type: TC
Location: 8939 - 11644 (-)
Type: TC
Location: 8939 - 11644 (-)
Gene ID: MGYG000001186_18_10
Type: pfam
Location: 11694 - 12161 (-)
Type: pfam
Location: 11694 - 12161 (-)
Gene ID: MGYG000001186_18_11
Type: STP
Location: 12158 - 13216 (-)
Type: STP
Location: 12158 - 13216 (-)
Gene ID: MGYG000001186_18_12
Type: TC
Location: 13576 - 14925 (+)
Type: TC
Location: 13576 - 14925 (+)
Gene ID: MGYG000001186_18_13
Type: pfam
Location: 15004 - 16539 (-)
Type: pfam
Location: 15004 - 16539 (-)
Gene ID: MGYG000001186_18_14
Type: pfam
Location: 16626 - 17795 (-)
Type: pfam
Location: 16626 - 17795 (-)
Gene ID: MGYG000001186_18_15
Type: CAZyme
Location: 18005 - 19114 (-)
Type: CAZyme
Location: 18005 - 19114 (-)
Gene ID: MGYG000001186_18_16
Type: CAZyme
Location: 19178 - 22258 (-)
Type: CAZyme
Location: 19178 - 22258 (-)
Gene ID: MGYG000001186_18_17
Type: TC
Location: 22465 - 23295 (-)
Type: TC
Location: 22465 - 23295 (-)
Gene ID: MGYG000001186_18_18
Type: TC
Location: 23288 - 24190 (-)
Type: TC
Location: 23288 - 24190 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter sp905209075
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000001186_18_13 | vegan > omnivore | 1.38166 | 0.00181 |
| MGYG000001186_18_17 | vegan > omnivore | 1.39360 | 0.00181 |
| MGYG000001186_18_17 | vegetarian > omnivore | 1.41272 | 0.00455 |
| MGYG000001186_18_18 | vegan > omnivore | 2.60994 | 0.00181 |
| MGYG000001186_18_18 | vegetarian > omnivore | 1.14930 | 0.00455 |