Cluster: MGYG000001173_CGC20
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 6
- Substrate:
- Genome ID: MGYG000001173
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000001173_102 | MGYG000001173_102_32 | 37390 | 40170 | + | GH73 |
| NULL(UNKNOWN) | MGYG000001173_102 | MGYG000001173_102_33 | 40346 | 41434 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000001173_102 | MGYG000001173_102_34 | 41665 | 42720 | + | 9.B.18.2.1 |
| pfam | MGYG000001173_102 | MGYG000001173_102_35 | 42722 | 43939 | + | Epimerase | Polysacc_synt_C |
| CAZyme | MGYG000001173_102 | MGYG000001173_102_36 | 43999 | 45063 | + | GT4 |
| pfam | MGYG000001173_102 | MGYG000001173_102_37 | 45084 | 46259 | + | Epimerase_2 |
| CAZyme | MGYG000001173_102 | MGYG000001173_102_38 | 46259 | 47500 | + | GT4 |
| CAZyme | MGYG000001173_102 | MGYG000001173_102_39 | 47527 | 48240 | + | GT2 |
| pfam | MGYG000001173_102 | MGYG000001173_102_40 | 48237 | 48593 | + | DUF2304 |
| pfam | MGYG000001173_102 | MGYG000001173_102_41 | 48619 | 50802 | + | DUF7654 | DUF7657 |
| CAZyme | MGYG000001173_102 | MGYG000001173_102_42 | 50881 | 53280 | - | GT2 | GT2 |
| CAZyme | MGYG000001173_102 | MGYG000001173_102_43 | 53356 | 54597 | - | GT111 |
Gene ID: MGYG000001173_102_32
Type: CAZyme
Location: 37390 - 40170 (+)
Type: CAZyme
Location: 37390 - 40170 (+)
Gene ID: MGYG000001173_102_33
Type:
Location: 40346 - 41434 (+)
Type:
Location: 40346 - 41434 (+)
Gene ID: MGYG000001173_102_34
Type: TC
Location: 41665 - 42720 (+)
Type: TC
Location: 41665 - 42720 (+)
Gene ID: MGYG000001173_102_35
Type: pfam
Location: 42722 - 43939 (+)
Type: pfam
Location: 42722 - 43939 (+)
Gene ID: MGYG000001173_102_36
Type: CAZyme
Location: 43999 - 45063 (+)
Type: CAZyme
Location: 43999 - 45063 (+)
Gene ID: MGYG000001173_102_37
Type: pfam
Location: 45084 - 46259 (+)
Type: pfam
Location: 45084 - 46259 (+)
Gene ID: MGYG000001173_102_38
Type: CAZyme
Location: 46259 - 47500 (+)
Type: CAZyme
Location: 46259 - 47500 (+)
Gene ID: MGYG000001173_102_39
Type: CAZyme
Location: 47527 - 48240 (+)
Type: CAZyme
Location: 47527 - 48240 (+)
Gene ID: MGYG000001173_102_40
Type: pfam
Location: 48237 - 48593 (+)
Type: pfam
Location: 48237 - 48593 (+)
Gene ID: MGYG000001173_102_41
Type: pfam
Location: 48619 - 50802 (+)
Type: pfam
Location: 48619 - 50802 (+)
Gene ID: MGYG000001173_102_42
Type: CAZyme
Location: 50881 - 53280 (-)
Type: CAZyme
Location: 50881 - 53280 (-)
Gene ID: MGYG000001173_102_43
Type: CAZyme
Location: 53356 - 54597 (-)
Type: CAZyme
Location: 53356 - 54597 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900759335
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000001173_102_32 | vegan > omnivore | 1.34848 | 0.03844 |
| MGYG000001173_102_32 | vegetarian > omnivore | 1.94470 | 0.01489 |
| MGYG000001173_102_33 | vegetarian > omnivore | 1.65733 | 0.02476 |
| MGYG000001173_102_35 | vegetarian > omnivore | 1.07532 | 0.02476 |
| MGYG000001173_102_36 | vegan > omnivore | 1.75915 | 0.03844 |
| MGYG000001173_102_36 | vegetarian > omnivore | 2.45701 | 0.02476 |
| MGYG000001173_102_38 | vegetarian > omnivore | 1.11946 | 0.02476 |
| MGYG000001173_102_39 | vegan > omnivore | 1.48500 | 0.03844 |
| MGYG000001173_102_39 | vegetarian > omnivore | 2.37014 | 0.02476 |
| MGYG000001173_102_42 | vegan > omnivore | 2.27266 | 0.03844 |
| MGYG000001173_102_42 | vegetarian > omnivore | 2.85080 | 0.02476 |
| MGYG000001173_102_43 | vegetarian > omnivore | 1.62383 | 0.02476 |