Cluster: MGYG000001165_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000001165
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000001165_9 | MGYG000001165_9_85 | 90147 | 90914 | - | 3.A.1.103.1 |
| TC | MGYG000001165_9 | MGYG000001165_9_86 | 90927 | 91772 | - | 3.A.1.103.6 |
| CAZyme | MGYG000001165_9 | MGYG000001165_9_87 | 91934 | 92863 | + | GT81 |
| CAZyme | MGYG000001165_9 | MGYG000001165_9_88 | 92895 | 94736 | - | GT2 |
| pfam | MGYG000001165_9 | MGYG000001165_9_89 | 94769 | 95956 | - | LicD |
| CAZyme | MGYG000001165_9 | MGYG000001165_9_90 | 96056 | 97891 | - | GT2 |
Gene ID: MGYG000001165_9_85
Type: TC
Location: 90147 - 90914 (-)
Type: TC
Location: 90147 - 90914 (-)
Gene ID: MGYG000001165_9_86
Type: TC
Location: 90927 - 91772 (-)
Type: TC
Location: 90927 - 91772 (-)
Gene ID: MGYG000001165_9_87
Type: CAZyme
Location: 91934 - 92863 (+)
Type: CAZyme
Location: 91934 - 92863 (+)
Gene ID: MGYG000001165_9_88
Type: CAZyme
Location: 92895 - 94736 (-)
Type: CAZyme
Location: 92895 - 94736 (-)
Gene ID: MGYG000001165_9_89
Type: pfam
Location: 94769 - 95956 (-)
Type: pfam
Location: 94769 - 95956 (-)
Gene ID: MGYG000001165_9_90
Type: CAZyme
Location: 96056 - 97891 (-)
Type: CAZyme
Location: 96056 - 97891 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900758845
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000001165_9_86 | vegan > omnivore | 1.92950 | 0.01144 |
| MGYG000001165_9_87 | vegan > omnivore | 3.14571 | 0.01144 |
| MGYG000001165_9_87 | vegetarian > omnivore | 1.60035 | 0.02608 |
| MGYG000001165_9_88 | vegan > omnivore | 17.33012 | 0.01144 |
| MGYG000001165_9_88 | vegetarian > omnivore | 12.73219 | 0.04816 |
| MGYG000001165_9_89 | vegan > omnivore | 17.54172 | 0.01144 |
| MGYG000001165_9_90 | vegan > omnivore | 10.05754 | 0.01144 |