Cluster: MGYG000001161_CGC10
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000001161
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000001161_48 | MGYG000001161_48_6 | 5073 | 6290 | - | GT4 |
| pfam | MGYG000001161_48 | MGYG000001161_48_7 | 6305 | 7069 | - | BcrAD_BadFG |
| pfam | MGYG000001161_48 | MGYG000001161_48_8 | 7225 | 8388 | - | HGD-D |
| TC | MGYG000001161_48 | MGYG000001161_48_9 | 8465 | 9250 | - | 3.A.1.5.36 |
| TC | MGYG000001161_48 | MGYG000001161_48_10 | 9240 | 10235 | - | 3.A.1.5.37 |
| TC | MGYG000001161_48 | MGYG000001161_48_11 | 10239 | 11069 | - | 3.A.1.5.39 |
| TC | MGYG000001161_48 | MGYG000001161_48_12 | 11066 | 12019 | - | 3.A.1.5.11 |
| TC | MGYG000001161_48 | MGYG000001161_48_13 | 12108 | 13718 | - | 3.A.1.5.11 |
| pfam | MGYG000001161_48 | MGYG000001161_48_14 | 13905 | 15188 | - | HGD-D |
| TC | MGYG000001161_48 | MGYG000001161_48_15 | 15620 | 16690 | - | 3.A.1.1.3 |
| TC | MGYG000001161_48 | MGYG000001161_48_16 | 16694 | 18136 | - | 3.A.1.8.1 |
Gene ID: MGYG000001161_48_6
Type: CAZyme
Location: 5073 - 6290 (-)
Type: CAZyme
Location: 5073 - 6290 (-)
Gene ID: MGYG000001161_48_7
Type: pfam
Location: 6305 - 7069 (-)
Type: pfam
Location: 6305 - 7069 (-)
Gene ID: MGYG000001161_48_8
Type: pfam
Location: 7225 - 8388 (-)
Type: pfam
Location: 7225 - 8388 (-)
Gene ID: MGYG000001161_48_9
Type: TC
Location: 8465 - 9250 (-)
Type: TC
Location: 8465 - 9250 (-)
Gene ID: MGYG000001161_48_10
Type: TC
Location: 9240 - 10235 (-)
Type: TC
Location: 9240 - 10235 (-)
Gene ID: MGYG000001161_48_11
Type: TC
Location: 10239 - 11069 (-)
Type: TC
Location: 10239 - 11069 (-)
Gene ID: MGYG000001161_48_12
Type: TC
Location: 11066 - 12019 (-)
Type: TC
Location: 11066 - 12019 (-)
Gene ID: MGYG000001161_48_13
Type: TC
Location: 12108 - 13718 (-)
Type: TC
Location: 12108 - 13718 (-)
Gene ID: MGYG000001161_48_14
Type: pfam
Location: 13905 - 15188 (-)
Type: pfam
Location: 13905 - 15188 (-)
Gene ID: MGYG000001161_48_15
Type: TC
Location: 15620 - 16690 (-)
Type: TC
Location: 15620 - 16690 (-)
Gene ID: MGYG000001161_48_16
Type: TC
Location: 16694 - 18136 (-)
Type: TC
Location: 16694 - 18136 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900548265
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000001161_48_6 | vegan > omnivore | 1.66364 | 0.01144 |
| MGYG000001161_48_9 | vegan > omnivore | 2.83555 | 0.01144 |
| MGYG000001161_48_9 | vegetarian > omnivore | 1.02538 | 0.04521 |
| MGYG000001161_48_11 | vegan > omnivore | 2.89212 | 0.01144 |
| MGYG000001161_48_11 | vegetarian > omnivore | 1.18781 | 0.04521 |
| MGYG000001161_48_12 | vegan > omnivore | 2.74556 | 0.01144 |
| MGYG000001161_48_12 | vegetarian > omnivore | 1.16386 | 0.04521 |
| MGYG000001161_48_13 | vegan > omnivore | 3.25265 | 0.01144 |
| MGYG000001161_48_13 | vegetarian > omnivore | 1.00164 | 0.04521 |