Cluster: MGYG000001159_CGC8
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 6
- Substrate: arabinogalactan/xylan
- Genome ID: MGYG000001159
- CGC Family ID: CGCFAM_00936
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000001159_16 | MGYG000001159_16_24 | 27744 | 28670 | + | GT2 |
| CAZyme | MGYG000001159_16 | MGYG000001159_16_25 | 29067 | 30740 | - | GH43_4 |
| CAZyme | MGYG000001159_16 | MGYG000001159_16_26 | 30750 | 32306 | - | GH43_4 |
| CAZyme | MGYG000001159_16 | MGYG000001159_16_27 | 32436 | 34556 | + | GH43_27 |
| TF | MGYG000001159_16 | MGYG000001159_16_28 | 34669 | 35736 | + | LacI |
| CAZyme | MGYG000001159_16 | MGYG000001159_16_29 | 36187 | 37206 | + | GH43_26 |
| TC | MGYG000001159_16 | MGYG000001159_16_30 | 37482 | 38786 | + | 3.A.1.1.47 |
| TC | MGYG000001159_16 | MGYG000001159_16_31 | 38933 | 39877 | + | 3.A.1.1.36 |
| TC | MGYG000001159_16 | MGYG000001159_16_32 | 39874 | 40785 | + | 3.A.1.1.36 |
| TF | MGYG000001159_16 | MGYG000001159_16_33 | 40921 | 41970 | - | LacI |
| CAZyme | MGYG000001159_16 | MGYG000001159_16_34 | 42203 | 43270 | + | GH43_22 |
Gene ID: MGYG000001159_16_24
Type: CAZyme
Location: 27744 - 28670 (+)
Type: CAZyme
Location: 27744 - 28670 (+)
Gene ID: MGYG000001159_16_25
Type: CAZyme
Location: 29067 - 30740 (-)
Type: CAZyme
Location: 29067 - 30740 (-)
Gene ID: MGYG000001159_16_26
Type: CAZyme
Location: 30750 - 32306 (-)
Type: CAZyme
Location: 30750 - 32306 (-)
Gene ID: MGYG000001159_16_27
Type: CAZyme
Location: 32436 - 34556 (+)
Type: CAZyme
Location: 32436 - 34556 (+)
Gene ID: MGYG000001159_16_28
Type: TF
Location: 34669 - 35736 (+)
Type: TF
Location: 34669 - 35736 (+)
Gene ID: MGYG000001159_16_29
Type: CAZyme
Location: 36187 - 37206 (+)
Type: CAZyme
Location: 36187 - 37206 (+)
Gene ID: MGYG000001159_16_30
Type: TC
Location: 37482 - 38786 (+)
Type: TC
Location: 37482 - 38786 (+)
Gene ID: MGYG000001159_16_31
Type: TC
Location: 38933 - 39877 (+)
Type: TC
Location: 38933 - 39877 (+)
Gene ID: MGYG000001159_16_32
Type: TC
Location: 39874 - 40785 (+)
Type: TC
Location: 39874 - 40785 (+)
Gene ID: MGYG000001159_16_33
Type: TF
Location: 40921 - 41970 (-)
Type: TF
Location: 40921 - 41970 (-)
Gene ID: MGYG000001159_16_34
Type: CAZyme
Location: 42203 - 43270 (+)
Type: CAZyme
Location: 42203 - 43270 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium pullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000001159_16_25 | vegan > omnivore | 1.98677 | 0.00821 |
| MGYG000001159_16_25 | vegetarian > omnivore | 1.15806 | 0.01057 |
| MGYG000001159_16_26 | vegan > omnivore | 1.29474 | 0.01252 |
| MGYG000001159_16_30 | vegan > omnivore | 1.97965 | 0.01252 |
| MGYG000001159_16_30 | vegetarian > omnivore | 1.39811 | 0.01057 |
| MGYG000001159_16_31 | vegan > omnivore | 1.80724 | 0.01252 |
| MGYG000001159_16_31 | vegetarian > omnivore | 1.06996 | 0.01057 |
| MGYG000001159_16_32 | vegan > omnivore | 1.31583 | 0.01252 |